Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0251 atgaaaccaaTAGAAATGGAAAGCAACGCACCAGTAGTAGCGAAGAAAGTGTGGGACATGGTACGCGTGCTCTTCTTCATGCTGAGAAAAGGCATATCGAAGGGGAAGCCGATGATGGACCTCAACGTGATGCTGAAACGCCGCGGCAAGCTCGCCGGCAAAGCCATTGCGAACCTCAtgttccaccaccaccaccaccatcacggTGGCTCCTCCCGCTCCCACGAGTTCTCGGCCCCGAGGGAGTACGAGTTCAGCTGCAGCAACACGCCGGCCAACACCATGGGGAAGCGCCACCGCCACTTCTTCGCGTGCGTCCACGCGCCTCCCACGCAGGACGACGACGTCGTGACGGTGAACGCGGTGAAGGCGGTGCTGGAGATGCTCAACAACGACGTTAAGGTAGAGGCGGCGGCGTCCCCTGCGCTGCCGGGGTTTGGACGCAGCCCCATGGTGAGGCAGTTGAGGGTCACAGACTCGCCGTTCCCTCTGAGAGACGCCGACGAAGACAACGACCACCAGGTCGATAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTACAAGAACTTGAGGAAGCAGGATTAA 585 0.5538 MKPIEMESNAPVVAKKVWDMVRVLFFMLRKGISKGKPMMDLNVMLKRRGKLAGKAIANLMFHHHHHHHGGSSRSHEFSAPREYEFSCSNTPANTMGKRHRHFFACVHAPPTQDDDVVTVNAVKAVLEMLNNDVKVEAAASPALPGFGRSPMVRQLRVTDSPFPLRDADEDNDHQVDKAAEEFIKRFYKNLRKQD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0251 194 Pfam Cotton fibre expressed protein 173 193 IPR008480 -
Ssu8g0251 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 193 - -
Ssu8g0251 194 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 6 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0251 Ssu-Chr8 3688176 3688760 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0251 - - gmx:100802625 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3320 4 83564731 83565327 Ssu8g0251 8 3688176 3688760 ECH
Ssu5g3271 5 81873851 81874528 Ssu8g0251 8 3688176 3688760 ECH
Ssu8g0251 8 3688176 3688760 Ssu8g0251 8 3688176 3688760 ECH
Ssu8g0251 8 3688176 3688760 Ssu4g3320 4 83564731 83565327 PCT