Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3320 ATGGAAAGCAATACACCATTAATAGCAAAGAGAGTGTGGAACATAATACGTGTGGCCTTCTTCATGTTGAGAAAAGGCATATCAAAGGGGAAACTAATGATGCACCTCAACGTGATGCTCAAACGCCGCAGCAAGCTCGCCGGCAAAGCCATCACCAACCTCGTGTTCCACCACCACAGCCACGGCGTCTCCGGCAACAACGACCCGCGCCTCCAATTCTCCGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACGCCCAACAACTTCTTCACGGCCATCGGTGGCAGCAACAAgcgccaccgccaccaccccTTCTTCACGTGCGCCCACGCGCCGCCCACACTCGACGACGACGCGGTCACCGTTAATGTCGTTAAGGGCGTGTTGGAGATGCTGAACAATGAGGCCACAGTGGAGGCGTCCCCGGCGCCGGCGCTACCCGGGTTCGGCCCTAGCCCTGGGGTGAGGCCGTTGAGGGTGACGGACTCTCCGTTCCCACTTCGAGACTTCAAGGATGATGTGGACAACCAAGTGGACAAGGCTGCGGAAGCGTTCATAAAGAGGTTCTACAAAGAGTTGAGGAAGCAGACTTGA 597 0.5461 MESNTPLIAKRVWNIIRVAFFMLRKGISKGKLMMHLNVMLKRRSKLAGKAITNLVFHHHSHGVSGNNDPRLQFSAAREYEFSCSNTPNNFFTAIGGSNKRHRHHPFFTCAHAPPTLDDDAVTVNVVKGVLEMLNNEATVEASPAPALPGFGPSPGVRPLRVTDSPFPLRDFKDDVDNQVDKAAEAFIKRFYKELRKQT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3320 198 Pfam Cotton fibre expressed protein 176 197 IPR008480 -
Ssu4g3320 198 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 197 - -
Ssu4g3320 198 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3320 Ssu-Chr4 83564731 83565327 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3320 - - gmx:100801941 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3320 4 83564731 83565327 Ssu8g0251 8 3688176 3688760 ECH
Ssu5g3271 5 81873851 81874528 Ssu4g3320 4 83564731 83565327 ECH
Ssu4g3320 4 83564731 83565327 Ssu4g3320 4 83564731 83565327 ECH
Ssu8g0251 8 3688176 3688760 Ssu4g3320 4 83564731 83565327 PCT