Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3271 ATGCCTacagaaataaaacaaaacaacaaaaacaaacactCGACTGACGAAATGGAAATTGAGGCAAGCACCCCGGTGGTGGCAAAGAAGCTATGGAACATCGTACGCGTGTTGTTCTTCATGTTGAGAAAGGGCATAGCGAAGAGCAAAATAATGGTCGAGTTCGACCTGATGCTGAAACGTGGCAAATTGGCGGGGAAGGCCCTGGTGAGCAACCTCATGCTGAGGCACCACTACTACATGACCTCTTTCACGTGCCGCTCCCACCACAACACCTTCATCTCCCCCCGCCACTACGAGTTCAGCTGCAGCAACAGCCCCGCCATCCCTTTCCACGCCCCAAAACGCAGCAGCAATAAGCGCCACTTCGCCACCCCCTTCTCCTCCAAGCCCTCCCAATACGACGACGTTTCCACCCTCACCTCTGTTCAGAAGGTTCTCGAGATGCTCAACGGCGAAAACAATAATTCCCCCTTGGTGTCGTTGCCCGGCTTCGGAAAGAGCCCTGTTGGGAGACAACTAAGAGTCACCGACTCACCCTTCCCTCTCAAGGACGAAGAAGGGGATGGCCAAGTCGACGCGGCAGCCGAAGAATTCATCAAGAAGTTCTATAGGGACCTCAACCTGCAAAAAAGAATGGCTCTTGAGTCCCCATATCATAACTCGTGGGACAGATGA 678 0.5118 MPTEIKQNNKNKHSTDEMEIEASTPVVAKKLWNIVRVLFFMLRKGIAKSKIMVEFDLMLKRGKLAGKALVSNLMLRHHYYMTSFTCRSHHNTFISPRHYEFSCSNSPAIPFHAPKRSSNKRHFATPFSSKPSQYDDVSTLTSVQKVLEMLNGENNNSPLVSLPGFGKSPVGRQLRVTDSPFPLKDEEGDGQVDAAAEEFIKKFYRDLNLQKRMALESPYHNSWDR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3271 225 Pfam Cotton fibre expressed protein 190 223 IPR008480 -
Ssu5g3271 225 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 21 220 - -
Ssu5g3271 225 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 21 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3271 Ssu-Chr5 81873851 81874528 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3271 - - zju:107411296 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3271 5 81873851 81874528 Ssu4g3320 4 83564731 83565327 ECH
Ssu5g3271 5 81873851 81874528 Ssu8g0251 8 3688176 3688760 ECH
Ssu5g3271 5 81873851 81874528 Ssu5g3271 5 81873851 81874528 ECH
Ssu5g3271 5 81873851 81874528 Ssu5g3271 5 81873851 81874528 PCT