Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2897 ATGGGATCCCAAACACAGTCTCAGCTACCAGTTGTAGACTTCACTAACGAAAATCTGAAACCGGGTACTGATACATGGGTTTCAGCTTGTCAAGTAGTGCGTAGTGCACTTGAGGATCATGGTGGTTTCTTGGCACTCTATGATAAGGTCAGTTTGGAGACATACGACTCTGTTTACTCCGCAATGGAGAAATTTTTTGACCTCTCAATAGACACAAAACGGAGAAAGACCACTGAAAAGCCCATATTTAGCTACTCCGGGCAGCGACCTGGGATTCCTTTATATGAATCTGCGGGTATCATGAACCCACTGAGCTTTGAGGATTGTCAGAAATACACACACGTTATGTGGCCCCAAGGAAACGATCATTTCTGTGAAAGTGTCAATTCCTATGCAAAGCAACTAGCGGAATTGGACCATACTGTGAAGAGAATGCTGTTTGAGAGCTATGGACTGGAGAGGAAGAAATTTCAGTCTTTACTTGAATCAACTGACTATGTGCTCCGAGGCTACAAATACAGAATTCCCCAAGTGGGTGAGAGCAATGTGGGAGTGGCTCCTCATTCTGACACAGCTGTGCTAACTATATTGAATCAGAAGGTAGAAGGCTTGGGGGTCAAATTGAAGGATGGGGAATGGTTTGAGGTGGGTGCTTCACCCTCGCTGTATTTGGTAATGGGTGGCGATGCATTGATGGTTTGGAGTAATGACAGGATACCCGCTTGTGAACACAGAGTTGCCATAAACTCAAAGACAGACAGATACTCCATGGGACTACTTTCATATGCTGCTAAGATAATGGAACCACAAGAGGAGCTAGTTGATGAAGAACATCCTCTACGTTATAAACCATTTGACCATTACGGATACCTTCGTTTCTTTCTCACAGAAGAAGCCATAAAATCTGATTCCCGGGTCAGGGCATATTGTGGTCTTTGA 939 0.443 MGSQTQSQLPVVDFTNENLKPGTDTWVSACQVVRSALEDHGGFLALYDKVSLETYDSVYSAMEKFFDLSIDTKRRKTTEKPIFSYSGQRPGIPLYESAGIMNPLSFEDCQKYTHVMWPQGNDHFCESVNSYAKQLAELDHTVKRMLFESYGLERKKFQSLLESTDYVLRGYKYRIPQVGESNVGVAPHSDTAVLTILNQKVEGLGVKLKDGEWFEVGASPSLYLVMGGDALMVWSNDRIPACEHRVAINSKTDRYSMGLLSYAAKIMEPQEELVDEEHPLRYKPFDHYGYLRFFLTEEAIKSDSRVRAYCGL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2897 312 SUPERFAMILY Clavaminate synthase-like 6 297 - -
Ssu7g2897 312 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 4 311 - -
Ssu7g2897 312 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 86 IPR026992 -
Ssu7g2897 312 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 311 - -
Ssu7g2897 312 Gene3D - 1 301 IPR027443 -
Ssu7g2897 312 Pfam 2OG-Fe(II) oxygenase superfamily 181 257 IPR044861 -
Ssu7g2897 312 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 163 269 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2897 Ssu-Chr7 62293704 62295992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2897 3 283 Glycosyltransferase AT5G59530 24.080 1.36e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2897 - - gmx:100789342 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1541 4 26185579 26188352 Ssu7g2897 7 62293704 62295992 PCT
Ssu7g2897 7 62293704 62295992 Ssu4g1540 4 26159869 26161924 PCT