Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1540 ATGGGGTCGGAAAGAGAGTCTCAGCTTCCTCTACCTGTCATTGATTTCAGTGATGAAAACTTGAAACCTGGGACTGACACATGGGTTTCTGCTTGTGAAGTTGTGAGGAGTGCATTCCAGGATCACGGGGTGTTCCTAGCACTCTACGATAAGGTTGATCCATTGCTCTATGACTCTGTCTTCTCTGCAATGGAACAACTCTTTGATCTTccattagaaacaaaaatgcaaCACACCACTGATAAGCCCATCTATAGCTATGCGGGGCAACGCCCTGATATTCCTTTATATGAATCCATGGCCATAGATAACCCACTGAATGCTAAAGATTGTCACAAGTACACAACTACTATGTGGCCACAAGGGAATGACCATTTCAgtggAAGTGTCAATTCCTATGCGAAGAAAGTGGTGGAACTGGATTATATTGTAAAGAGAATGGTGTTTGAGAGCTATGGATTAGACAATCAGAAATATTCAGGCTTCCTAACTATATTGAATCAGAAGTTAAATGGCTTAGAAATTCAATTGAAGGATGGAGAGTGGGTCCAGGTTGATGCCTCACCCTCCATGTTTACGGTCTTGGCTGGTGATGCATTCATGGTATGGAGTAATGACAGGATACGCGGTTGTGTACACCGAGTATTCATGAATTCAAAGGTAGATAGATACTGCTTGGGGCTGCTTTCATATGCTGGTAAAGTGATGGAACCAGAGGAAGAGCTAGTGGATGAGAAACATCCTCTTCGTTATAAACGATTTGACCATTATGGATATCTTCGTTTCTTCCTCACAGAAGAAGCTGTAAAATCTGCTTCTAGGATCAAGGCATATTGTGGTATTTAA 846 0.4102 MGSERESQLPLPVIDFSDENLKPGTDTWVSACEVVRSAFQDHGVFLALYDKVDPLLYDSVFSAMEQLFDLPLETKMQHTTDKPIYSYAGQRPDIPLYESMAIDNPLNAKDCHKYTTTMWPQGNDHFSGSVNSYAKKVVELDYIVKRMVFESYGLDNQKYSGFLTILNQKLNGLEIQLKDGEWVQVDASPSMFTVLAGDAFMVWSNDRIRGCVHRVFMNSKVDRYCLGLLSYAGKVMEPEEELVDEKHPLRYKRFDHYGYLRFFLTEEAVKSASRIKAYCGI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1540 281 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 161 280 - -
Ssu4g1540 281 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 158 - -
Ssu4g1540 281 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 161 280 - -
Ssu4g1540 281 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 5 158 - -
Ssu4g1540 281 Pfam 2OG-Fe(II) oxygenase superfamily 157 226 IPR044861 -
Ssu4g1540 281 Gene3D - 160 279 IPR027443 -
Ssu4g1540 281 Pfam non-haem dioxygenase in morphine synthesis N-terminal 11 88 IPR026992 -
Ssu4g1540 281 SUPERFAMILY Clavaminate synthase-like 7 266 - -
Ssu4g1540 281 Gene3D - 1 159 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1540 Ssu-Chr4 26159869 26161924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1540 151 252 Glycosyltransferase AT5G59530 29.358 1.30e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1540 - - gmx:100817683 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1540 4 26159869 26161924 Ssu7g2896 7 62184972 62186192 PCT
Ssu7g2897 7 62293704 62295992 Ssu4g1540 4 26159869 26161924 PCT