Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1541 ATGGGATCCCAAACAAAGTCTCAACTTCATGTTGTGGACTTCACTGATGAAAACATGAAGCCTGGCACCGATGCATGGCTCTCAGCCTGCAGTGTTGTGAGGACTGCACTTGAGGACAATGGTTGTTTCGTGGCACGCTATGATAAAATTGGCAAAGAGCTTTGCGACTCTATTGTATTTGCAATGGAAGAGTTATTTAGTCTCCCAGTGGAAACAAAAGCACAAAAGACAAGTGACAAACTTTTCCATGGTTACTTAGGAAAAGTCTCATGGCTTCCCTTGTATGAATCTTTGGGCATTGATGATCCGCTGACTATACAAGGATGTCAAAAATTCGCCCACATAATGTGGCCGGAGGGGAATGGTCGTTTCGGTGAAATCATCAATGAGTATGCTAAGCTGTTGGGAGAATTAGACCATATGGCGAAGAGAATGGTGTTTGAGAGCTTTGGTGTGGACATGCAACGATGCGATTCTTTCATAGAATCAAGCGATTATCTCCTTCGATGCACGAAATACAGGACACCTCAGATGGATGAAAATGATATGGGACTGCAACCTCACGCGGACTTGACCATCATATCCATAGTACATCAGCTGAATAATCTGAATGGCTTGGAAATCAAACTGAAGGATGGGGAGTGGAAGGGGGTTGATGCCTCTTCATCCTTGTTTGTGGTTATGGCCGGTGACGCATTCAATGTGTGGAGTAATGGCAGGATACGTCCATGTGAACACAGAGTTACAATGAATGCAAAGAAAACCAGATACTCTATGGGACTGTTTTCTTTTGGTGGTGAGATCATGCGGATTCCAGAGGAGCTAGTTAATGAGCAACATCCCCTGCGTTATAAACCAATATTCGACCATTATGAATACCTTCGTTTCTTTGACAAAGAGAAAATCAAAGAGGCTGATTCTCGAATCCAAGCGTACTGTGGAATCTGA 948 0.4357 MGSQTKSQLHVVDFTDENMKPGTDAWLSACSVVRTALEDNGCFVARYDKIGKELCDSIVFAMEELFSLPVETKAQKTSDKLFHGYLGKVSWLPLYESLGIDDPLTIQGCQKFAHIMWPEGNGRFGEIINEYAKLLGELDHMAKRMVFESFGVDMQRCDSFIESSDYLLRCTKYRTPQMDENDMGLQPHADLTIISIVHQLNNLNGLEIKLKDGEWKGVDASSSLFVVMAGDAFNVWSNGRIRPCEHRVTMNAKKTRYSMGLFSFGGEIMRIPEELVNEQHPLRYKPIFDHYEYLRFFDKEKIKEADSRIQAYCGI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1541 315 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 314 - -
Ssu4g1541 315 SUPERFAMILY Clavaminate synthase-like 8 301 - -
Ssu4g1541 315 Pfam 2OG-Fe(II) oxygenase superfamily 175 263 IPR044861 -
Ssu4g1541 315 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 163 267 IPR005123 -
Ssu4g1541 315 Gene3D - 7 313 IPR027443 -
Ssu4g1541 315 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 4 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1541 Ssu-Chr4 26185579 26188352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1541 130 285 Glycosyltransferase AT5G59530 25.926 5.86e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1541 - - gmx:100775440 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1541 4 26185579 26188352 Ssu7g2897 7 62293704 62295992 PCT