Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2896 ATGGCCACCCAAACAGTGTGTGAATCTCCACTTCCTGTTGTTGACTTCTCCAACGAAAATATGAAGCCGGGCACCGATACATGGCTTGCAGCCTGTCAAGTGGTGCGGAGAGGATTTGAGGATTACGGTTGTTTCCTAGCACAGTTCGATAAGGCTGGGCCAGAGCTTCCCAACTCTGTTTTCTATGCAATGGAAGAGCTCTTTGGTCTCCCATTGGaaacaaaaaggagaaaaaccAGTCATAAACCAAACCATGGCTACACCGGACAAGTGCCTGCATCTCCTCTATTTGAATCTTTTGCGATTGACAATCCATCGAATATTGAAGATTGTCAAAAATTCACACGCATAATGTGGCCAGAAGGAAATAACTCTTTGTGTGAAAGTGTCAACGAGTATGCAAAGTTGTTAAAAGAACTAGACCAAACCGTGAAGAAAATGGTGTTTGATAGCTATGGCCTGGACAAGTTGAAATGCGAGTCATTCCTGGAATCAACCAATTATGCTTTTCGATGCTACAAATACAAGATACCTGAGATGGAAGAGAGCAACGTGGGGGTGAATCCTCATACGGACTCAACCTTCATAACCATATTGCATCAAAAGGTAGCTGGCTTGGAAGTTAAATCGAAAGATGGAGAATGGTTTGGTGTTGATGCCTCACCTTTGTTTTGTGTCATGGCTGGTGATGCATTTATGGTATGGAGTAGTGAAAGGATACGCGCTTGTGAACATCGTGTCATCTTGAAATCAAAGGTAACCAGGTACTCCTTGGGATTACTTTCGTACAGTACTAAGATGGTGCAGACATTAGAGGATCTAGTCGATGAGGAACATCCTATACGCTATAAGCCATTTAACCATTATGCATACGTTGGGTTCCGTTTCACAGAAGAAGCCGTAAAATGCACAAGTCGAATCAAAGCATATTGTGGTATTTAA 942 0.4204 MATQTVCESPLPVVDFSNENMKPGTDTWLAACQVVRRGFEDYGCFLAQFDKAGPELPNSVFYAMEELFGLPLETKRRKTSHKPNHGYTGQVPASPLFESFAIDNPSNIEDCQKFTRIMWPEGNNSLCESVNEYAKLLKELDQTVKKMVFDSYGLDKLKCESFLESTNYAFRCYKYKIPEMEESNVGVNPHTDSTFITILHQKVAGLEVKSKDGEWFGVDASPLFCVMAGDAFMVWSSERIRACEHRVILKSKVTRYSLGLLSYSTKMVQTLEDLVDEEHPIRYKPFNHYAYVGFRFTEEAVKCTSRIKAYCGI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2896 313 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 165 270 IPR005123 -
Ssu7g2896 313 SUPERFAMILY Clavaminate synthase-like 9 298 - -
Ssu7g2896 313 Pfam 2OG-Fe(II) oxygenase superfamily 180 258 IPR044861 -
Ssu7g2896 313 Pfam non-haem dioxygenase in morphine synthesis N-terminal 11 89 IPR026992 -
Ssu7g2896 313 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 312 - -
Ssu7g2896 313 Gene3D - 9 311 IPR027443 -
Ssu7g2896 313 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 4 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2896 Ssu-Chr7 62184972 62186192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2896 128 284 Glycosyltransferase AT5G59530 25.904 1.09e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2896 - - gmx:100777761 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1540 4 26159869 26161924 Ssu7g2896 7 62184972 62186192 PCT
Ssu7g2896 7 62184972 62186192 Ssu4g1539 4 26149961 26151410 PCT