Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1539 atGGGATCAGAAACCGAACTGAAGCTTCCAATTATTGACTTCTCTATCGTggacttggagaccaatgctgCTGAGTGGGACTCAGTGAAATCCCAAGTTCACAAAGCACTTGTAGAGTATGGTTGCTTTGAGGCCGTGTTTGATGAAGTCCCTTTGGACCTTCGGAAAGCCATATTTCTTGAAGTGGAAGAGCTATTCGATCTCCCTTTACAAACCAAACAGCGCGTTGTGTCTAGTAAGCCATACCATGGTTATGTTGGGCCTATTCAACTCTATGAGAGCATGGGAATTGACGAAGCAGATGTTCATGAGAAAGTGGAAAGTTTAATCAATATCTTATGGCCACAAGGAAAACCAAGTTTTAGcaaaaatctacaattcTTCATAGAGCAAGTGTCGAGGTTGGATCGGATCATTAGGAAGATGATTTTGGAGAGTTTAGGTGTTGAAAAATATCTGGACGAGCACGTGAACTCAACTAATTACCTTGCACGGCTTATCAAGTACGAAGGCCCTCAAACTAATGAAGCAAAAGTTGGCATAACAGAGCACACAGATAAGAACATATTAACCACATTGTGTCAAAATCGAATTGACGGTTTAGAGGTACAGACCAAAAGTGGAGGGTGGATCAAATGCAAGCCCTCGACGTCAAATAGTTTCGTTGTTCTTACTGGGGACTCCCTTTATGCATGGACAAACGGCAGGGTGCATACGCCGGTTCACCGAGTGATGATTGCTGGAAATGAGACAAGGTTCTCTATTGGACTGTTCACAGTTCCAAAACCAGGGCTCATAATAAAAGCCCCAGATGAGCTTGTGACAGAGGAGCACCCTTTGCTTTTTAAGCCCTTTGTCCAGAGTGAGTTCATGAAGTTTCTTCGCTCTTCTGAAGGTATCAAAAATGCTCTGAAGGTTTATTGTGGAGTCTGA 933 0.4148 MGSETELKLPIIDFSIVDLETNAAEWDSVKSQVHKALVEYGCFEAVFDEVPLDLRKAIFLEVEELFDLPLQTKQRVVSSKPYHGYVGPIQLYESMGIDEADVHEKVESLINILWPQGKPSFSKNLQFFIEQVSRLDRIIRKMILESLGVEKYLDEHVNSTNYLARLIKYEGPQTNEAKVGITEHTDKNILTTLCQNRIDGLEVQTKSGGWIKCKPSTSNSFVVLTGDSLYAWTNGRVHTPVHRVMIAGNETRFSIGLFTVPKPGLIIKAPDELVTEEHPLLFKPFVQSEFMKFLRSSEGIKNALKVYCGV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1539 310 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 88 IPR026992 -
Ssu4g1539 310 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 4 309 - -
Ssu4g1539 310 Pfam 2OG-Fe(II) oxygenase superfamily 158 259 IPR044861 -
Ssu4g1539 310 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 309 - -
Ssu4g1539 310 SUPERFAMILY Clavaminate synthase-like 6 295 - -
Ssu4g1539 310 Gene3D - 1 297 IPR027443 -
Ssu4g1539 310 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 160 261 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1539 Ssu-Chr4 26149961 26151410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1539 3 290 Glycosyltransferase AT5G59530 23.718 3.12e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1539 - - gmx:100817152 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2896 7 62184972 62186192 Ssu4g1539 4 26149961 26151410 PCT