Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1727 ATGTCTCACACCCCTCAAACCCTGGATTCCGAGGAGGCACCCCCCGCCCAGACACCCGATTCCCGCTCCTCCACCCTCCTCCACCTCTCCTTCAACCAGGACTCCGGGTGCTTCGCCGCCGCCACCGACCACGGCTTCCGCATCTACAACTGTGACCCCTTCCGCGAGATTTTCCGGCGCGACTTCGGCCCCGGCGGCGGGATCGGCCTCGTCCACATGCTCTTCCGCTGCAACATCCTCGCCTTCGTCGGCGGCGGCTCCGACCCCCGCTACCCGCCCAACAAGGTCATGATCTGGGACGACCACCAGTCCCGCTGCATCGGGGAGCTCTCCTTCCGGTCCGAGGTCAAGGGCGTCCGTCTCCGGCGCGACCGAATCGTCGTCGTGCTGGCCCACAAGATATTCGTCTACAACTTCGCGGATCTGAAGGTGCTGCACCAAATCGAGACCATCGCGAACCCGAAGGGCCTCTGCGACCTCTCCCACGTCTCCGCCAGCATGGTCTTGGTGTGCCCTGGCTTGCAGAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCCAAGAGGACCAAGTTCATCATGGCTCACGACTCCCGAATCGCCTGTTTTGCTCTCACGCACGATGGACGCTTGCTCGCCACCGCCAGCTCCAAGGGCACCCTCGTTAGGCTCTTCAATACCCTCGATGGTTCATTGCTCCAAGAGGTACGGAGGGGTGCAGACAGAGCAGAGATATACAGCCTTGCTTTCTCTCCTACTGCGCAGTGGCTGGCTGTTTCGAGTGACAAGGGGACCGTTCATGTTTTTAACCTGAAGGTTGATTCTGGACTGTTGGGGCATGACAGATCGCATGGTTCTTCTGAGGCTAATCCTGCTAGCCCCACCACAGTTTCATCTCTTTCCTTTATTAAAGGTGTGCTACCTAAGTATTTTAGCTCAGAGTGGTCTGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAGTATATTGTTGCATTTGGCCATCAAAAGAATACAGTTGTAATACTTGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATTCTGCGCCCGGCGGAGAAATGACCCAACTTGAATATTACAATTTCCTAAAGCCAGAAGAGACATTCTAG 1128 0.5656 MSHTPQTLDSEEAPPAQTPDSRSSTLLHLSFNQDSGCFAAATDHGFRIYNCDPFREIFRRDFGPGGGIGLVHMLFRCNILAFVGGGSDPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPKGLCDLSHVSASMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTHDGRLLATASSKGTLVRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHGSSEANPASPTTVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTVVILGMDGSFYRCQFDSAPGGEMTQLEYYNFLKPEETF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1727 375 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 10 375 - -
Ssu7g1727 375 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 10 375 - -
Ssu7g1727 375 SMART WD40_4 12 50 IPR001680 GO:0005515
Ssu7g1727 375 SMART WD40_4 185 225 IPR001680 GO:0005515
Ssu7g1727 375 SMART WD40_4 228 269 IPR001680 GO:0005515
Ssu7g1727 375 Gene3D - 26 355 IPR015943 GO:0005515
Ssu7g1727 375 SUPERFAMILY WD40 repeat-like 22 271 IPR036322 GO:0005515
Ssu7g1727 375 MobiDBLite consensus disorder prediction 1 23 - -
Ssu7g1727 375 Pfam WD domain, G-beta repeat 238 269 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1727 Ssu-Chr7 35579739 35582607 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1727 K22991 - gmx:100787427 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0671 4 10533870 10537156 Ssu7g1727 7 35579739 35582607 ECH
Ssu7g1727 7 35579739 35582607 Ssu7g1727 7 35579739 35582607 ECH
Ssu4g1333 4 22059032 22060153 Ssu7g1727 7 35579739 35582607 PCT