Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1333 ATGTCTGTTGCACCAGTTGAGAGCATCCCCCCATTAAGCAGCGATCTCTTCTATGACATATTTCGTCGACTTGATGGTGCAACATTGGCTAGTGCAGCATGTACTTGTGCAGCGTTGTGTTCCATCTCAAAAGAAGAGAGTTTATGGGAGAACGTATGTTCATCTATGTGGCCTTCAACCAGTAGAGAGGATGTCAAAAGTTTAATATCTTCTGTTGGTGGATTCAGAAAATTCTATGCTGATTGTTTCCCGCTTATCGTAAACAAGGAGGTTGTAGAGTATCAacagaacaactatcttgagtACCTGGACAATTGGACTGAAGCTGAATATTATGGGGACATGAATGAATCTGAAAGCATCTCTCCGTCGGATTTTGTTTCTATAGTAGATATTAGGTTCAAGGGGAAACCAATCTGTTCCAAAGTTCTCTGGGGAATTCCAAATGCAAATGGCTATGATGGTTGGTTCTATAACTGCCCTTTTGGGATTGATATTCTCACTTATGCAGATAGAGATGATAACAATGATGGAGTGGTTAACCTTTCTGTAGCTGATGGTCTGCCACCAATTACATCCTTGGAGAGGGAAAGGAAAGATGGGAAGCTGTGGCGGGAGCTCCGTGAAGGGCTCCAGCTCAGTTGGATTATAGTAAACAGGAAAATAAAACAAGCTGCAAATCTTGCTAGCTGGAGCCCTCTTGGTGGTCAAAGACATTGGCCAACAGATAAGGATTTTGTTATTCGCTTTGGATCAGTTCTGCCTGCCAAGGACATTCTTCCTTGTCAGGTAGTGGAATGTATCCTCATTATGAAGTTTAGAGTGGTTCACACTGAAGAAGATGGGGTCCAAACAACTCTTAAATTAACAGAGTTGAGCATGCAGTTGGAAGACATGGAAGGTGCTCATGTTAATGGAAGAAACAGTTTGCATATACTCAAGGAAGCACTTAGCAGCCGAAGGAGCAAAAATTATGGAGAAGTACTTGAGTCTTGTCATATGTATTCAAAAGTACAGAATGAGTTGAAAGAGGAGAAGATGAGAAACGAAAGTAGGTTGGATAGACTTTGTATTTTAAGTGGCATTGCCGCGTTTATGACGTTCTGGTACTGCGTTTTATGA 1122 0.41 MSVAPVESIPPLSSDLFYDIFRRLDGATLASAACTCAALCSISKEESLWENVCSSMWPSTSREDVKSLISSVGGFRKFYADCFPLIVNKEVVEYQQNNYLEYLDNWTEAEYYGDMNESESISPSDFVSIVDIRFKGKPICSKVLWGIPNANGYDGWFYNCPFGIDILTYADRDDNNDGVVNLSVADGLPPITSLERERKDGKLWRELREGLQLSWIIVNRKIKQAANLASWSPLGGQRHWPTDKDFVIRFGSVLPAKDILPCQVVECILIMKFRVVHTEEDGVQTTLKLTELSMQLEDMEGAHVNGRNSLHILKEALSSRRSKNYGEVLESCHMYSKVQNELKEEKMRNESRLDRLCILSGIAAFMTFWYCVL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1333 373 Gene3D - 4 106 - -
Ssu4g1333 373 PANTHER F-BOX PROTEIN-RELATED 4 369 IPR045283 -
Ssu4g1333 373 PANTHER F-BOX PROTEIN-RELATED 4 369 - -
Ssu4g1333 373 SUPERFAMILY F-box domain 8 79 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1333 Ssu-Chr4 22059032 22060153 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1333 - - gmx:100500689 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1333 4 22059032 22060153 Ssu4g1333 4 22059032 22060153 ECH
Ssu4g1333 4 22059032 22060153 Ssu7g1727 7 35579739 35582607 PCT