Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0671 ATGGCCACCCTTTCCGCATGCGCTTCCCCTCCTTGGCCAAACCCTAACCCTACCACCACCCCCAATTCAAATCCAAACCCTAATTTCCACCCCGACCAATCCCAAACCCTCGACTTCGACTCCCTCATGCCTCCGCAACCCGAATCCCCGCCTTCCCACCACCACTCCCCCGCCGCCTCGCCGGAATCTTCCCCGCCGCCGCCGTCGCTCCTCCACCTCTCCTTCAACCAGGACCAGGCCTGCTTCGCCGCGGCCACCGACAACGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGCTCTTCCGCCGCGAGTTCGACGGCAGCGGAATCGGCCACGTGGAGATGCTCTTCCGCTGCAACATCCTCGCCCTCGTCGGCGGCGGCTCCCACCCCCAGTACCCGCCCAACAAGGTCATGATCTGGGACGACCACCAGGGCCGCTGCATCGGCGAGCTCTCCTTCCGCGCCGCCGTGCGCGGCGTGAGGCTCCGCCGCGACCGAATCGTCGTCGTCGTGGAGCAGAAGATATTCGTGTACAACTTCGTGGACCTCAAGCTCGTGCACCAGATTGAGACCGTCGCGAACCCTAAGGGGCTCTGCGCGGTCTCGCAGTTGTCGGATTCTCTGGTTCTCGCGTGCCCGGGGTTGCACAAGGGTCAGATTCGCATCGAGCACTACGCGCAGAAGAAGACGAAGCTCGTTTCGGCGCACGATTCCAGAATCGCTTGTTTCGCTCTCACGCTTGATGGGCAGTTACTCGCCACCGCCAGTACCAAGGGCACGTTGATTCGGATTTTCGACACGGATCACGGCACGCTTCTTCAGGAAGTGAGAAGGGGTGCGAATGCAGCAGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTTAAGGTTAATTCTAGCAACCCTGAGCAGGAAAAGTCGCAAAGTTCATCCAATTCAGATGCTACCATTACCCCATCCAACTCATCTCGCTccttcattaaatttaaagGAGTGCTGCCCAAGTATTTCAATTCTGAATGGTCAGTTGCTCAGTTTCACTTACAAGAGGGCTCTCATTACACAGTTGCATTTGGTCTCCAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATCGATGCCAATTTGATCCAGGACGTGGAGGGGAGATGACTCAGCTGGAATATCGTAACATTTTAAAGCCAGAACCAGAAACAGCCTTGTGA 1269 0.5587 MATLSACASPPWPNPNPTTTPNSNPNPNFHPDQSQTLDFDSLMPPQPESPPSHHHSPAASPESSPPPPSLLHLSFNQDQACFAAATDNGFRIYNCDPFRELFRREFDGSGIGHVEMLFRCNILALVGGGSHPQYPPNKVMIWDDHQGRCIGELSFRAAVRGVRLRRDRIVVVVEQKIFVYNFVDLKLVHQIETVANPKGLCAVSQLSDSLVLACPGLHKGQIRIEHYAQKKTKLVSAHDSRIACFALTLDGQLLATASTKGTLIRIFDTDHGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSNPEQEKSQSSSNSDATITPSNSSRSFIKFKGVLPKYFNSEWSVAQFHLQEGSHYTVAFGLQKNTVIILGMDGSFYRCQFDPGRGGEMTQLEYRNILKPEPETAL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0671 422 Pfam WD domain, G-beta repeat 281 311 IPR001680 GO:0005515
Ssu4g0671 422 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 25 418 - -
Ssu4g0671 422 SUPERFAMILY WD40 repeat-like 66 321 IPR036322 GO:0005515
Ssu4g0671 422 SMART WD40_4 44 94 IPR001680 GO:0005515
Ssu4g0671 422 SMART WD40_4 228 268 IPR001680 GO:0005515
Ssu4g0671 422 SMART WD40_4 271 312 IPR001680 GO:0005515
Ssu4g0671 422 MobiDBLite consensus disorder prediction 44 68 - -
Ssu4g0671 422 MobiDBLite consensus disorder prediction 319 338 - -
Ssu4g0671 422 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 25 418 - -
Ssu4g0671 422 MobiDBLite consensus disorder prediction 10 24 - -
Ssu4g0671 422 MobiDBLite consensus disorder prediction 1 71 - -
Ssu4g0671 422 Gene3D - 70 335 IPR015943 GO:0005515
Ssu4g0671 422 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0671 Ssu-Chr4 10533870 10537156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0671 K22991 - gmx:100781692 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0671 4 10533870 10537156 Ssu7g1727 7 35579739 35582607 ECH
Ssu4g0671 4 10533870 10537156 Ssu4g0671 4 10533870 10537156 ECH