Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3110 ATGGCCGAGTCCCCGGAAACCCCCGCAGGTGTTTTCCCGGCAACCCCGGAAGCGAAAGCCGAGTTCGGTGCCGGATCCGGGTGGGGTGATAACCCGTTTCAGGGTATTAGAAGAGTGGGTTTGAGAGCGGTAATTGATACTTCGCCGCCGTTTGGGTCTGTCAAGGAAGCGGTTACCCGTTTTGAAGGAAGCAGACCTGGTTCAGCTCTCAGTGTTtgtttctactttatttttaaattcagaAGCAGTACTGAAGAATTTGACATAAAGAGAGTGGAGGAAGAAGCAGCAAAGTTGGAAAAGGATTTGATAGTGAAAGAACTCGAAACGCTTGATGTGCTTGAAGAACTGGGAGCTACCAAAGCAATTTTGGAGGAATTAAAGCAGCAGCTACAATCAAAAGCCTTGAGTTGTTTTTCAACTCCAGATGTAAATTCATGTGAACAGGTTGGAGCTCCTGTTAAAAATTGTGTAAACGTTATCAACAATCAAGAGCAGACATTGCAAAGTCCGAGCCCGCGTGCTACTTCATCGCCTGATCTGTTCTTAATGGAGTTAAAACAAGCTAAAATTGACCTTGGCAAAACTATAAATGATCTTGGGGTGATACAGTCTTCTGTTGAAACTTTGaataagaagatgaagaaggagaggcTTTTTCTTGAGAGGACGCGTGAGAAGCTAGCATCAAAGTTTGCTGCTGTCTCTACACAAGAAGTTGCCCAAAACGAAGCGCGGTCAAATCCAACACCAGCTCCTGTAGGAACAAGTTGCACTTGTCATCATCCCCTAAATGTTGTGAGGAGTTTCGAATTTGATACTGGACAGTACAATGGAATGAGTGAAACAAGAAGCTCTGAAGTTTCAAGGCCCTTGCCTGAGTTTGGAGAGAATGGATTTAATATTAAGACTGCTGAGATGAGGTGGTTTGCAGCTAAAAAGATGGAGGAAGCTGCAATGGCAGCAGAAGCCGTTGCTCTTGCTGAAATTGAAGCTCTATGTAGCACTGAGATATCATCAGAATTAGCTCTTCCAGAACATCAGAAAGTGGCCTTTGCTTTAGGGGAGCGCTCTCCTCTAAACCCCATAGTTCAAATTCCTCAAGAGTCAACCGTGAAGGAGGTAATAGATTCCAAGTTccaaattgagaaaataggtaCTTCTAAACTGagtgttttgaaaaaattggagGAAGCAGCAGAAGAAGTTCTGCGCAGCAAACAAGTCTTGACTGAGGCATTGAACAGTGTTGAAAGTGCAAACAGAAAGCAACATGCTGCTGAAGAGGCTCTTCGGAGATGGATTCCTGAGGATGGTCCAAAAGGTCAGCCAGTGTATGACTATATCAACGATGATCCAAAGCCGATCTTAAGGTCTTCGGTTTCGATGAGAGATGTACTTAGCAGAAAGCAAGTTCCTGAAGAATACACTACAGCAAAGGAGATGGAAGAGCACTCTGAAAGAAGGGTAACATTTAGTCAAATGCTTCGAGCATTGAGGGGGGATCAAACTCTACCAACAATACCCGAGAAAGATGGGAGCAATCAAAAACAGTTCATAGCACAGAGGAAGAAGTTTGGATTCATCCACATATCACTCCCCTTGGGAAAGCGAAGTAGGAAAAAGGCATGA 1632 0.4228 MAESPETPAGVFPATPEAKAEFGAGSGWGDNPFQGIRRVGLRAVIDTSPPFGSVKEAVTRFEGSRPGSALSVCFYFIFKFRSSTEEFDIKRVEEEAAKLEKDLIVKELETLDVLEELGATKAILEELKQQLQSKALSCFSTPDVNSCEQVGAPVKNCVNVINNQEQTLQSPSPRATSSPDLFLMELKQAKIDLGKTINDLGVIQSSVETLNKKMKKERLFLERTREKLASKFAAVSTQEVAQNEARSNPTPAPVGTSCTCHHPLNVVRSFEFDTGQYNGMSETRSSEVSRPLPEFGENGFNIKTAEMRWFAAKKMEEAAMAAEAVALAEIEALCSTEISSELALPEHQKVAFALGERSPLNPIVQIPQESTVKEVIDSKFQIEKIGTSKLSVLKKLEEAAEEVLRSKQVLTEALNSVESANRKQHAAEEALRRWIPEDGPKGQPVYDYINDDPKPILRSSVSMRDVLSRKQVPEEYTTAKEMEEHSERRVTFSQMLRALRGDQTLPTIPEKDGSNQKQFIAQRKKFGFIHISLPLGKRSRKKA 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3110 543 PANTHER WEB FAMILY PLANT PROTEIN 5 542 - -
Ssu6g3110 543 Coils Coil 82 109 - -
Ssu6g3110 543 Coils Coil 114 134 - -
Ssu6g3110 543 Coils Coil 211 231 - -
Ssu6g3110 543 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 5 542 - -
Ssu6g3110 543 Pfam Weak chloroplast movement under blue light 176 437 IPR008545 -
Ssu6g3110 543 Coils Coil 393 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3110 Ssu-Chr6 70658406 70660321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3110 - - gmx:100781281 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3110 6 70658406 70660321 Ssu4g2486 4 62557106 62559687 ECH
Ssu6g3110 6 70658406 70660321 Ssu6g3110 6 70658406 70660321 ECH
Ssu9g1666 9 53552944 53555515 Ssu6g3110 6 70658406 70660321 PCT