Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2486 ATGGAAGTTCCCGACGCGGCGGCGAACCGGTCCGGACCGGGTTTCAGGGCGGAGATCGATACATCGGCGCCATTCGAGTCGGTGAAGGAAGCCGTCACGCGATTCGAAGGTGTTGGTTATTGGAGACCCGTTCTTCACGGTCTCAGTAACAAGCACTTTGCTCCTCCTGAGCAGCATCATACGGAAGAGCTTGACCCTGGAAAACTGGAGGAGCAAGCTGCTGTACTAGAGAAAGAGCTGATCCTGAAGGAAAGGGAAACTCTTGATGTCTTGAAAGAGTTGGAAAGTACCAAAAAGCTTGTGGAGAATTTGAAATCAAAGCTACAGAAAGAAGAATCTGAGGCAAATTTGAATTCTCAGATGAGTGTGTGCGATGATATATTGTCTGTTAAGGAGGATGAGAAAGAAGATAAGGAAAACCAAGTGAGTAATGTTGTTCAGCATTCAAAGGAAGGTTGTATCCCCTATCCTTCGTCAGCCCCGGGTTTGATATTAATGGAATTGAAGCAAGCGAAATTGAATCTGAACAGAACTACAAGTGATATTGCTGATGTTCGTGCTTCTGTTGAATCGCTCAATAAGAAGTTAGAGAAGGAAAGACTATCACTTGAGAAAACCCGTGAGAGGTTAACTCAGAATTCTTCAAAGATATGTTCTCTTGAGGAAGAGCTAAACCAGACAAAACTAAAACTGCTAGTGGCGAAAGATGCCGGTTCGGATAACCCTTCAGATACTACAAGAGAGCTCCAGCGACTGAGTTCTGAGGCAGAGCATTTCAAGAAAATGGGAGAAGCTGCTAAATCGGAAGTCTTGAAAGCAATGTCTGAGATTGAACAGACAAAGGCTATGATAAAAACTGCCGAAATCAGGTTGGTTGCTGCCCGAAAAATGAAGGAAGCTGCTAGGGCAGCAGAAGCTGCTGCCCTTGCAGAGATCAAAGCTTTATCGCATCATGAGAATTCACCTGGAGATTGTATGCAAAAGCATGATGGAGTTACCCTTTCCTTTGAAGAGTATACTGCGCTAACCTGCAAGGCTCGCGAGGCCGAGGAACATTCTAAGAAGAGGGTTGTAGATGCTATGCTTCTAGTTGATGAAGCAAACATATCAAAAACAGACATTTTGAAAAAGGTAGAGGAAGCCACTGAAGAAGTTAAAACCAGCAAGAAGGCCCTGGAAGAAGCTCTGGAAAGGGTAGAGGCTGCGAATCGAGGGAAGCTAGCAGTTGAGGAGGCTTTAAGGAAGTGGCGGTCAGAGGGTCACAAACGGCGTTCTTCCATACATAACTCTACCaagtttaaaaatgtttacCCTTCTCACCATCGGAAGGATTCTCGGTTACTTGATGTCAATGGGTTGAATCTGGTGAATGATGAAGCCAAGCCAGTTCTAAAGCCAACACTGTCTATAGGACAAATATTGAGCAGGAAGTTGATGATGCCGGAAGAGTATGAAGCTGGCGGGATGCATAGAGAAAGAAGCTCGGTGAAACGGAAGGTGTCTCTGGGTCAGATGCTAGGCAAACAAAATGCGGATCCATCCTTTGACAGGCAAGCTGAGAAAGAAAATGGTCAGAAACTGTTTTCTGCAAAGAGGAAGAAATTTGGGTTTGGTCGATTCTCCCTTCTTTTgacaaaacaacaaaagaagaagaagccaacgcTGAACTTGAGGTGA 1677 0.4395 MEVPDAAANRSGPGFRAEIDTSAPFESVKEAVTRFEGVGYWRPVLHGLSNKHFAPPEQHHTEELDPGKLEEQAAVLEKELILKERETLDVLKELESTKKLVENLKSKLQKEESEANLNSQMSVCDDILSVKEDEKEDKENQVSNVVQHSKEGCIPYPSSAPGLILMELKQAKLNLNRTTSDIADVRASVESLNKKLEKERLSLEKTRERLTQNSSKICSLEEELNQTKLKLLVAKDAGSDNPSDTTRELQRLSSEAEHFKKMGEAAKSEVLKAMSEIEQTKAMIKTAEIRLVAARKMKEAARAAEAAALAEIKALSHHENSPGDCMQKHDGVTLSFEEYTALTCKAREAEEHSKKRVVDAMLLVDEANISKTDILKKVEEATEEVKTSKKALEEALERVEAANRGKLAVEEALRKWRSEGHKRRSSIHNSTKFKNVYPSHHRKDSRLLDVNGLNLVNDEAKPVLKPTLSIGQILSRKLMMPEEYEAGGMHRERSSVKRKVSLGQMLGKQNADPSFDRQAEKENGQKLFSAKRKKFGFGRFSLLLTKQQKKKKPTLNLR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2486 558 Coils Coil 364 412 - -
Ssu4g2486 558 Coils Coil 91 121 - -
Ssu4g2486 558 Coils Coil 277 304 - -
Ssu4g2486 558 Pfam Weak chloroplast movement under blue light 17 119 IPR008545 -
Ssu4g2486 558 Pfam Weak chloroplast movement under blue light 166 423 IPR008545 -
Ssu4g2486 558 Gene3D - 164 320 - -
Ssu4g2486 558 PANTHER MYOSIN HEAVY CHAIN-LIKE 12 552 - -
Ssu4g2486 558 Coils Coil 175 213 - -
Ssu4g2486 558 MobiDBLite consensus disorder prediction 508 527 - -
Ssu4g2486 558 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 12 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2486 Ssu-Chr4 62557106 62559687 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2486 - - gmx:100783770 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3110 6 70658406 70660321 Ssu4g2486 4 62557106 62559687 ECH
Ssu4g2486 4 62557106 62559687 Ssu4g2486 4 62557106 62559687 ECH
Ssu3g0992 3 23248821 23251156 Ssu4g2486 4 62557106 62559687 PCT