Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3077 ATGTATGAACTAAAAATGACTTGTCGTCTTCAACTCCACCGATTCAACCCTAGGACCGACACGTCCACCGCCATCGCAAACGGCGTTAACTGCCCGAAGCCGGCGCCGTCAGCGCGCCGTCTAGCGGTGAAAGTGAGCGTGCCGGAGACGGTAGCCCGGCACCACGCGCACGCGGTGGGGCCGAACCAGTGCTGCTCCGTCGTGATCCAGCCGATCGCCGCGCCGGTGTCCGCCGTGTGGCCGGTGGTGCGGCGATTCGACAACCCGCAGGGGTACAAGCACTTCGTGAAGAGCTGCCACGTGGTCGCCGGCGACGGCATTCGCGTCGGCGCGCTCCGCGAGGTGCGCGTGGTCTCCGGCCTCCCCGCGGTGTCGAGCACGGAGCGCCTCGAGATCCTCGACGACGAGCGCCACGTCATGAGCTTCAGCGTGGTCGGCGGCGACCACCGCCTGAGGAACTACCGGTCGGTGACGACGCTGCACGGCGACGGTGATGGAGGGACAGTTGTCATCGAGTCGTACGTCGTTGACGTACCGCCCGGTAACACCAACGAGGAGACGTGCGTTTTCGTGGACACAATCGTACGGTGCAATTTGCAGTCCCTGGCTCAGATCGCTCAAAACATGGCAAGTCAATACTGA 642 0.6386 MYELKMTCRLQLHRFNPRTDTSTAIANGVNCPKPAPSARRLAVKVSVPETVARHHAHAVGPNQCCSVVIQPIAAPVSAVWPVVRRFDNPQGYKHFVKSCHVVAGDGIRVGALREVRVVSGLPAVSSTERLEILDDERHVMSFSVVGGDHRLRNYRSVTTLHGDGDGGTVVIESYVVDVPPGNTNEETCVFVDTIVRCNLQSLAQIAQNMASQY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3077 213 PANTHER - 31 209 - -
Ssu6g3077 213 CDD PYR_PYL_RCAR_like 64 204 - -
Ssu6g3077 213 SUPERFAMILY Bet v1-like 64 205 - -
Ssu6g3077 213 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORTER 31 209 - -
Ssu6g3077 213 Gene3D - 33 213 IPR023393 -
Ssu6g3077 213 Pfam Polyketide cyclase / dehydrase and lipid transport 70 204 IPR019587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3077 Ssu-Chr6 70245936 70246577 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3077 K14496 - gmx:100798803 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3077 6 70245936 70246577 Ssu4g2424 4 60564447 60565097 ECH
Ssu3g1052 3 24652630 24653196 Ssu6g3077 6 70245936 70246577 ECH
Ssu4g2424 4 60564447 60565097 Ssu6g3077 6 70245936 70246577 ECH
Ssu6g3077 6 70245936 70246577 Ssu6g3077 6 70245936 70246577 ECH
Ssu9g1634 9 53058848 53059513 Ssu6g3077 6 70245936 70246577 PCT