Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3022 ATGTTACCCCAGAAGCAAGGTGAAGAAACCATGATGTCAAACCTCAATGAAACGGTTGAGCGTgaggagagagaggaagagaaggtgGGTGATTCACATTCCAGTTTGAAAAGCCTTCTCTGGCATGGTGGGTCTGCTTATGATGCCTGGTTCAGCTGTGCCTCAAATCAGGTTGCGCAGGTGCTGTTAACACTGCCATGCTCTTTCTCTCAGCTGGGAATGCTTTCTGGCATCATATTCCAAATCTTCTACGGCCTAATGGGAAGTTGGACAGCTTATTTGATTAGCATTCTGTACCTCGAGTACAGGAgcagaaaagagaaagagaatgtcAGCTTCAAAAACCATGTCATTCAgTGGTTTGAAGTGTTGGAAGGTTTACTAGGTCCATGGTGGAAAGCCATTGGATTGGCCTTCAATTGCACTTTCCTCATCTTTGGATCTGTTATCCAGCTTATAGCTTGTGCAAGTAACATATACTACATAAATGACCACTTGGATAAGAGGACCTGGACTTACATTTTCGGAGCTTGTTGTGCCACCTCAGTGTTCATACCTTCATTTCACAACTACAGGATTTGGTCTTTCCTTGGCCTTGGCATGACCGCGTACACAGCTTGGTACTTGACCATTGCATCCATCGTTCATGGCCAGGTTGAAAATGTGACTCACACGGGCCCAAAACAATTGGTTTTGTATTTCACGGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGTGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTtcaaatatatctatttttatgcTACTCTTTTCATATTCACACTCACCCTACCATCTGCCATTGCCGTTTACTGGGCCTTTGGTGACCAACTCCTGGACCACTCCAAtgccttttctcttcttccccgCACCGGTTGGCGTGATGCAGGTGTCATCTTAATGCTCATTCACCAGTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAAAGCATGTGTTTGAGGGCTCTTGCAAGGTTGCCTGTGGTGATACCAATATGgttttttgctattattttccctttctttGGTCCCATAAACTCTGCTGTGGGGGCTCTTCTGGTTAGCTTCACCGTCTATATCATCCCTGCCGCTGCCCATATGGTCACTTACAGGTCTGCTTCTGCACGACAGAATGCTGCAGAGAAATTGCCCCTCCTCATCCCTAACTGGACGGCAATGTATATGATCAATGCATTTGTGGTGGTGTGGATTCTAGTGGTAGGATTTGGATTTGGAGGGTGGGCGAGTTTGACACACTTCATCAGACAGATTGACACATTTGGATTGTTTGCCAAGTGCTACCAGTGCCCGCCAAAAACCCCGGCTTCCAACCACACATTGCATCgctga 1437 0.4273 MLPQKQGEETMMSNLNETVEREEREEEKVGDSHSSLKSLLWHGGSAYDAWFSCASNQVAQVLLTLPCSFSQLGMLSGIIFQIFYGLMGSWTAYLISILYLEYRSRKEKENVSFKNHVIQWFEVLEGLLGPWWKAIGLAFNCTFLIFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATSVFIPSFHNYRIWSFLGLGMTAYTAWYLTIASIVHGQVENVTHTGPKQLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYFYATLFIFTLTLPSAIAVYWAFGDQLLDHSNAFSLLPRTGWRDAGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSMCLRALARLPVVIPIWFFAIIFPFFGPINSAVGALLVSFTVYIIPAAAHMVTYRSASARQNAAEKLPLLIPNWTAMYMINAFVVVWILVVGFGFGGWASLTHFIRQIDTFGLFAKCYQCPPKTPASNHTLHR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3022 478 MobiDBLite consensus disorder prediction 15 30 - -
Ssu6g3022 478 MobiDBLite consensus disorder prediction 1 30 - -
Ssu6g3022 478 PANTHER OS05G0424000 PROTEIN-RELATED 2 468 - -
Ssu6g3022 478 Coils Coil 5 25 - -
Ssu6g3022 478 Pfam Transmembrane amino acid transporter protein 42 435 IPR013057 -
Ssu6g3022 478 PANTHER AUXIN INFLUX TRANSPORTER 2 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3022 Ssu-Chr6 69235273 69239598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3022 4 465 Organic Solute Cotransporters AT2G21050 76.190 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3022 K13946 - gmx:100817572 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3022 6 69235273 69239598 Ssu4g2336 4 56574748 56580114 ECH
Ssu6g3022 6 69235273 69239598 Ssu6g3022 6 69235273 69239598 ECH
Ssu9g1577 9 52023690 52027585 Ssu6g3022 6 69235273 69239598 PCT