Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2336 ATGTTGTCTCAGAAGCAAGCAGGGGAAGCAATGGTCACAAACCTCAACGAGACGGAACATGAAGGCGGCAGCACAAGGGAAGAAGAGAGGGAGCAAGAGCAGTCCAAGTTCAACTTCAAGAACATCCTATGGCATGGTGGTTCTGTTTGGGATGCATGGTTCAGCTGTGCTTCAAATCAAGTAGCTCAAGTGCTCTTGACACTGCCATACTCCTTCGCTCAACTTGGCATGATATCAGGCATCTTGCTTCAGATCTTCTATGGCCTTATTGGAAGCTGGACTGCTTATCTAGTCAGTGTCCTCTACATAGAATACCGCACCaggaaggaaaaggaaaacGTCAGCTTCAAGAACCATGTCATTCAGTGGTTCGAAGTTCTTGATGGGTTACTTGGTCCATATTGGAAAGCAGTGGGGCTAGCCTTCAACTGTACGTTCCTCCTCTTTGGATCTGTGATACAGCTTATAGCATGTGCAAGTAACATCTATTACATAAACGACAAATTGTATAAACGGACTTGGACTTATATCTTTGGAGCTTGCTGTGCTACCACTGTGTTCATACCTTCCTTCCACAATTACCGAATCTGGTCATTCTTGGGTCTTGGAATGACCACGTACACGGCTTGGTACCTCACTATAGCAGCTATCGTTAATGGCCAGGTAGAAAATGTCACGCACTCGGGTCCAACAAAGCTAGTGTTATATTTCACTGGAGCCACTAACATACTCTACACATTTGGAGGACATGCTGTGACTGTAGAGATCATGCATGCCATGTGGAAGCCCCGAAAGTTCAAGTACATCTACTTGCTGGCGACTTTGTACGTTTTCACACTAACGATTCCTTCCGCCGTCGCCGTTTATTGGGCTTTTGGTGATCAGCTGCTTGACCACTCCAACGCCTTCTCTCTCCTCCCCAAGTCTGGCTACCGTGACGCCGCCATCATCCTCATGCTCATTCACCAGTTCATCACATTTGGGTTTGCGTGTACTCCGTTGTACTTCGTGTGGGAGAAGGCCATTGGGATGCACGACACAAAGAGCATTTGTGTGAGGGCACTTGCACGGTTGCCAGTGGTGATACCTATATGGTTCTTGGCTATAATCTTCCCTTTCTTTGGGCCCATAAATTCAGCTGTTGGGTCTCTACTCGTTAGCTTCACTGTCTACATCATCCCTGCCTTAGCCCATATGCTCACTTACAGAAAAGCCTCTGCCAGACAGAATGCTGCAGAGAAGCCTCCTTTCTTCATGCCAAGCTGGACTGCAATGTATGTCTTCAACGCATTCATTGTGGGATGGGTTTTGGTTGTTGGATTTGGACTTGGAGGGTGGGCCAGCATGATCAACTTGCTAAAGCAAATTGACACATTTGGACTTTTTGCAGAATGCTACCAGTGCCCCTCACCGCCGCCAGCGGCAGCACCACCCCCTCTTGCCCATTCAATGGCAGAGGGAGGAGGTGACCTAGAAGGGTCATGGTCACCCTCAAATTTATTgaagattatttaa 1515 0.4693 MLSQKQAGEAMVTNLNETEHEGGSTREEEREQEQSKFNFKNILWHGGSVWDAWFSCASNQVAQVLLTLPYSFAQLGMISGILLQIFYGLIGSWTAYLVSVLYIEYRTRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDKLYKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAIVNGQVENVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKYIYLLATLYVFTLTIPSAVAVYWAFGDQLLDHSNAFSLLPKSGYRDAAIILMLIHQFITFGFACTPLYFVWEKAIGMHDTKSICVRALARLPVVIPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMLTYRKASARQNAAEKPPFFMPSWTAMYVFNAFIVGWVLVVGFGLGGWASMINLLKQIDTFGLFAECYQCPSPPPAAAPPPLAHSMAEGGGDLEGSWSPSNLLKII 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2336 504 MobiDBLite consensus disorder prediction 1 32 - -
Ssu4g2336 504 PANTHER AUXIN TRANSPORTER-LIKE PROTEIN 4 2 471 - -
Ssu4g2336 504 MobiDBLite consensus disorder prediction 1 19 - -
Ssu4g2336 504 PANTHER OS05G0424000 PROTEIN-RELATED 2 471 - -
Ssu4g2336 504 Pfam Transmembrane amino acid transporter protein 45 438 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2336 Ssu-Chr4 56574748 56580114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2336 4 468 Organic Solute Cotransporters AT2G21050 76.344 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2336 K13946 - gmx:100809138 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3022 6 69235273 69239598 Ssu4g2336 4 56574748 56580114 ECH
Ssu4g2336 4 56574748 56580114 Ssu4g2336 4 56574748 56580114 ECH