Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2982 ATGGAGGCTTTATGCAACAAGGGTGGACAttttcaaaagagaaaagatggGTTTCCTTCTTCTGCTAGTGATTCAACTCAAGAAGCCAAAgggtcttctttttctcctcctcTTGGTTGGCCTATTCGGAAGGCTGCACTCTCCAAATGCCGCAAATCagatgaaaaggaaaatgaacCTGTTTCTCACTCGGAAGATACAAAATTTACCAGCATCAGTTCAAAAGTGTCAGGAATTGATGCAATGAAGGAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTCTGCACTGCTTTGGCCATCTCAAATGCTATTACTAATCTGTGTGCCACTGTATTTGGGCAATTGTGGAGACTAGAACCTGTGCCttgtgaaaagaaagaaatgtggCGGAGGGAAATGGAGTGGCTTCTTAGTGTTAGTGATCACATTGTTGAGTTAATACCTTCTTGGCAAACATTTCCAGATGGAAGTAAGCTTGAGGTAATGACTTGCAGGCCAAGGTCAGATCTTTTTATGAATCTTCCAGCTCTGCGTAAACTTGACAACATGCTTCTTGAAATTTTAGATAGTTGCAAAGACATGGACTTTTGGTATGTTGACCAAGGAATTGTAGCCCAAGATGCAGATGGTTCTTTTTGCAAACGAATTCAGCGGCAAGAGGATAAGTGGTGGCTCCCTGTACCTCGTGTCCCCCCTGCCGGCCTCAGTGAGAACACAAGAAAGCAGTTGAATCACACAAGGGAATGTGCGAGCCAAATACTAAAAGCTGCCATGGCTATCAACAATGGTGCTTTAGCTGAAATGGAAGTTCCTGAGTCATACTTGGAAACCCTTCCTAAGAATGGAAGAACATGCTTGGGGGATTTTATTTACCATTACATCACATCAGAAAAATTTTCTCCAGAGTGCCTGCTCGATTGCCTAGACCTCTCCTCTGAGCATGTTGCGCTAGAGATTGCAAACCGTGTGGAAGCCTCAATATATGTGTGGCGTAGAAGAGCTCACTCTAGACCCCCACCTAATCCTAACCGTTCAACTACCAAGTCATCCTGGGAAATTGTCAAGGACTTCATGGCTGATGGAGATAAGAGAGAACAACTAGCAGAAAGAGCTGAAAATGTTCTGGTTTCATTGAAGCAACGATTCCCGGGTCTAACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAGGATGTTGGGAAATCCATACTAGAGAGCTATTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTGGCTCGCATAGATGATTTGTTATATGTGGATGACTTAACTAAACATTCAGATAGGTTTCCATTGGTTCCAATGGCAGTGTCTGTCTCAGGCACTCCACGCAAAGCAGTTGGCACGCCAAGCTTTTCACCAGCGCCACTAATTAGTCCTGCAAAGGGAGAGAGATCTCCTTTcctcagcaacaacaacaacaacaacaacaacaataacaacatcaAAGCTCAACGTCGTGGCTTTGGGGTGAGAAGAGTATTGTCAAATTATCTTGGGGCAGAATCGAAAGAAACAAAGATTTTTAGCAATTCACTTGAGGTGAATGGTTCAAACCCAAGCAGCATTAAAACAGAACAGCCAGAACGCCAGAAGAAGTCACATGCCATGAATGGCAAGACAAAATGA 1683 0.4064 MEALCNKGGHFQKRKDGFPSSASDSTQEAKGSSFSPPLGWPIRKAALSKCRKSDEKENEPVSHSEDTKFTSISSKVSGIDAMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPVPCEKKEMWRREMEWLLSVSDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFMNLPALRKLDNMLLEILDSCKDMDFWYVDQGIVAQDADGSFCKRIQRQEDKWWLPVPRVPPAGLSENTRKQLNHTRECASQILKAAMAINNGALAEMEVPESYLETLPKNGRTCLGDFIYHYITSEKFSPECLLDCLDLSSEHVALEIANRVEASIYVWRRRAHSRPPPNPNRSTTKSSWEIVKDFMADGDKREQLAERAENVLVSLKQRFPGLTQTTLDTSKIQCNKDVGKSILESYSRVLESMAFNIVARIDDLLYVDDLTKHSDRFPLVPMAVSVSGTPRKAVGTPSFSPAPLISPAKGERSPFLSNNNNNNNNNNNIKAQRRGFGVRRVLSNYLGAESKETKIFSNSLEVNGSNPSSIKTEQPERQKKSHAMNGKTK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2982 560 MobiDBLite consensus disorder prediction 1 40 - -
Ssu6g2982 560 MobiDBLite consensus disorder prediction 18 33 - -
Ssu6g2982 560 Gene3D PRONE domain, subdomain 1 306 448 - -
Ssu6g2982 560 Gene3D PRONE domain, subdomain 1 71 305 - -
Ssu6g2982 560 MobiDBLite consensus disorder prediction 483 503 - -
Ssu6g2982 560 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 79 443 IPR005512 GO:0005085
Ssu6g2982 560 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 20 531 IPR038937 GO:0005085
Ssu6g2982 560 MobiDBLite consensus disorder prediction 527 560 - -
Ssu6g2982 560 MobiDBLite consensus disorder prediction 459 503 - -
Ssu6g2982 560 MobiDBLite consensus disorder prediction 527 543 - -
Ssu6g2982 560 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 20 531 - -
Ssu6g2982 560 ProSiteProfiles PRONE domain profile. 69 449 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2982 Ssu-Chr6 68522847 68525901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2982 - - vun:114193182 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2982 6 68522847 68525901 Ssu4g2228 4 52650007 52653613 ECH
Ssu6g2982 6 68522847 68525901 Ssu6g2982 6 68522847 68525901 ECH
Ssu9g1539 9 51399939 51402799 Ssu6g2982 6 68522847 68525901 PCT