Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2228 ATGGAAGGTGAGGTTTTGATTCAGAAGAGTGAAGGTGTGGAAGGAAACAAAGAATGGGAAAATGGTTGTAATGATAAGAGTTTTGCTGATTTGAGGAAAGAAAAGGGTCGAGAGAGCAGTTCCAGCTCTGAGTTTCTGTCATCTGAGATGACAGAACTTGATGGTCAGAGTCAAGGCAGTGCTGAAGATTCATCTTTAACTTCAATGGGATGGCCAGTTCAGGAAATCTCTGCATCTAATTGTACCAGTCCACGTGGAAGTGAAGATGCAGAGAAAAAAGACTTGGGTAATGAGAAATATGAGGAGCAAGTGTCTGTGTTACCAATACCAGTGCTAGAGCTTGAAATGATGAAGGAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGAAATGGAGTCCCTACAGCCTTGGCTATATCCAATGCCATAACTAATCTATGCGCCACCCTCTTTGGGCAACTTTGGAGATTGGAACCTTTGCCACCAGAGAAGAAAGCAATGTGGCGAAGAGAGATGGAGTGGCTTCTTTGTGTCAGTGATCATATTGTTGAATTGAAGCCTACATGGCAAACATTTCCGGATGGAAGCAAGCTTGAGGTCATGACTTGTAGACCTCGCTCAGATCTTTATGTCAATCTGCCAGCTCTGCGAAAATTAGATAACATGCTTCTTGAAATACTAGATAGTTTTGTGAATCCAGAGTTCAGGTATGTGGACCAAGGGGTTCTGGCCCCAGATGGAGATGGTTCATCTTCTTTTCGTAGAGCACTTCAGCGACAAGAGGAGAAGTGGTGGCTCCCTGTACCTCAAGTCCCTCCTTGTGGTCTCCATGAAAATTCAAGCAAGAAGTTGCAGCACAAGAGGGATTGCACAAAACAGATATTAAAAGCTGCAATGGCCATTAACAGCATTACTTTAGCTGAGATGGAGATTCCTGATACTTACTTGGAATCTCTTCCAAAGACTGCAAGAGCCAGCTTGGGGGATGTCATTTATAGATATATTACATCAGACAATTTTTCTCCTGAAAGTTTGCTAGCTTGCCTTGATTTATCATCTGAACATCAAGCCATAGAGATTGTCAACAGAGTAGAGGCTTCCATCTATATTTGGCATAAAAAGACCAACTCAAGGCCTACAGGTCGCACTACAAGATCCAGTTCAAAATCATCATGGGAAATGTTCAGGGATCTGATTGTTGAGGGAGACAAAAGCGAAATGCTTGCAGAAAGAGCTGAAAGCCTTCTGCTCTCCTTGAAGCAGGGCTTCCCTGGTCTCCCTCAAACAGCCTTGGATATGAACAAAATCCAATGCAACAAGGATCTTGGGAAATCCATTCTGGAGAGCTACTCACGAGTACTAGAGAGTTTGGCATCTAACATTGTTGCACGCATCGATGATGTGCTCTATGTAGATGACTTGAGTAAACATTCTGATCAATTCTCATCTCTCTCAAAAGTTGGTGCAATTGCCCACAAGAGCATTTCAGTTCCATACTCAATGCCTGGCCAAAGCAGTCCATATAAGTCATCTTTTGGCACACCTAGCTTTTCTCCTGCACAAGGTGTTAGCCCTGCAAAGAGAGTCAAATCACCATTCATCAACAACAGCAACCTTCCCCAGAGAGGGGTAGGGGTTAATAAAGTTTTGACTGATTTTGGTAGTATTGATAGGAAAGAGAAGGACTATGGCTTCTGTCCAATGGAAAAGTTTGTTCCAACACTAAAAACATTTGACGAAACAGACATGGAGTCCACTGATTGCACAGAAGAAGATGCTAAGCTCAAAGTACTCGACCAGGCATGGCTAGAGTGA 1827 0.4302 MEGEVLIQKSEGVEGNKEWENGCNDKSFADLRKEKGRESSSSSEFLSSEMTELDGQSQGSAEDSSLTSMGWPVQEISASNCTSPRGSEDAEKKDLGNEKYEEQVSVLPIPVLELEMMKERFAKLLLGEDMSGCGNGVPTALAISNAITNLCATLFGQLWRLEPLPPEKKAMWRREMEWLLCVSDHIVELKPTWQTFPDGSKLEVMTCRPRSDLYVNLPALRKLDNMLLEILDSFVNPEFRYVDQGVLAPDGDGSSSFRRALQRQEEKWWLPVPQVPPCGLHENSSKKLQHKRDCTKQILKAAMAINSITLAEMEIPDTYLESLPKTARASLGDVIYRYITSDNFSPESLLACLDLSSEHQAIEIVNRVEASIYIWHKKTNSRPTGRTTRSSSKSSWEMFRDLIVEGDKSEMLAERAESLLLSLKQGFPGLPQTALDMNKIQCNKDLGKSILESYSRVLESLASNIVARIDDVLYVDDLSKHSDQFSSLSKVGAIAHKSISVPYSMPGQSSPYKSSFGTPSFSPAQGVSPAKRVKSPFINNSNLPQRGVGVNKVLTDFGSIDRKEKDYGFCPMEKFVPTLKTFDETDMESTDCTEEDAKLKVLDQAWLE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2228 608 MobiDBLite consensus disorder prediction 1 40 - -
Ssu4g2228 608 MobiDBLite consensus disorder prediction 1 99 - -
Ssu4g2228 608 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 608 IPR038937 GO:0005085
Ssu4g2228 608 ProSiteProfiles PRONE domain profile. 104 486 IPR005512 GO:0005085
Ssu4g2228 608 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 608 - -
Ssu4g2228 608 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 113 480 IPR005512 GO:0005085
Ssu4g2228 608 Gene3D PRONE domain, subdomain 1 109 347 - -
Ssu4g2228 608 Gene3D PRONE domain, subdomain 1 348 485 - -
Ssu4g2228 608 MobiDBLite consensus disorder prediction 41 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2228 Ssu-Chr4 52650007 52653613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2228 - - gmx:100788452 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2982 6 68522847 68525901 Ssu4g2228 4 52650007 52653613 ECH
Ssu4g2228 4 52650007 52653613 Ssu4g2228 4 52650007 52653613 ECH