Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1613 ATGAGCACTGGGGAGCTCCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTTTGAGCTGAAGAAGCAGATCTCCTGTTCTCTTCAATTGTCTAATAAGACCGATAGCTATGTAGCCTTCAAGGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACGGGAATTGTCATGCCACGATCTACGTGTGATGTTATGGTTACCATGCAAGCTCAAAAAGAAGCGCCGCCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGCGTAAAAACTATTGATGGTGCCAACCCGAAGGATATCACTGCAGACATGTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGGTGTATGTTTCTCCACCTCAACCACCGTCTCCAGTGCCAGAAGGTTCTGAGGAAGGATCCTCACCTAGAGGTTCTGTTTCAGAGAATGGAAATGCCAATGGTTCTGACTTCGCACAAGTAGCAAGAGGATTTACTGAACGACCTGAGGCTCAAGACAAATCTGTAGAGGCTAGAGCTCTCATCTCAAGGCTGACCGAAGAAAAGAATAATGCAGTTCAACAAAATAGCAAGCTCCGCCAGGAACTGGAGCTACTGAAGCGGGAAGGCAACAAAAATCGTGGTGGAATCTCATTTGTCTTTGTCGTATTAATTGGCTTTCTTGGCATAATTATGGGGTATCTCATGAAGAAGACCTAA 726 0.4545 MSTGELLNIEPLELKFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVMPRSTCDVMVTMQAQKEAPPDMQCKDKFLLQSVKTIDGANPKDITADMFNKEAGHVVEECKLRVVYVSPPQPPSPVPEGSEEGSSPRGSVSENGNANGSDFAQVARGFTERPEAQDKSVEARALISRLTEEKNNAVQQNSKLRQELELLKREGNKNRGGISFVFVVLIGFLGIIMGYLMKKT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1613 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Ssu6g1613 241 SUPERFAMILY PapD-like 2 141 IPR008962 -
Ssu6g1613 241 Gene3D Immunoglobulins 2 130 IPR013783 -
Ssu6g1613 241 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 239 - -
Ssu6g1613 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
Ssu6g1613 241 Coils Coil 184 211 - -
Ssu6g1613 241 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Ssu6g1613 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Ssu6g1613 241 MobiDBLite consensus disorder prediction 143 159 - -
Ssu6g1613 241 MobiDBLite consensus disorder prediction 127 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1613 Ssu-Chr6 26839312 26843383 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1613 - - gmx:100527687 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1613 6 26839312 26843383 Ssu6g1613 6 26839312 26843383 ECH
Ssu2g2754 2 88161710 88165155 Ssu6g1613 6 26839312 26843383 PCT
Ssu6g1613 6 26839312 26843383 Ssu2g2694 2 87202762 87206785 PCT