Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1568 ATGGAGTGGCCAGCATGTACGGATGAGTATGAGAAGCTCGTAATTCGCATGAGCACCCCTAGGGTTGTCATAGACAATGCCGTGTGCTCCACTGCGACAATAGTCAAGGTTGATAGTGCCAGAAAGCACGGTATTCTTTTGGATGCCGTACAAGTACTCTCTGATCTGaatcttttaattaagaagGCCTACATTTCCTCTGATGGCAGGTGGTTCATGGATGTTTTCCACGTTACGGATCAAAACGGAAACAAGCTAACAGATGAGAGCGTTTTAAGTTATATTGAACAGTCACTTGGCAGCGTTCACAATGGGAAAACCAATCACTCGAACGGTCTCACTATCCTTGAATTAACCGGCACGGACCGCGTTGGTCTTCTTTCGGAGGTGTTTGCTGTGCTGGCTGAGCTGCAATGTGACGTGGTTGATGCTAAAGTTTGGACTCACAATGGCCGGATTGCTTCCTTAATTTATGTGAAAGACTGCAATTCTGGGACCCTTATTGAGGACTCTCAGAAAATTAGTAGGATTGAAGCACGTTTAAGAAATGTTTTAAAAGGTGACAATGATATTAGGAGCGCAAAAACTTCCGTCACTAATGCCGTTGTTCACACTGAAAGAAGGCTGCACCAAATGATGTACGCTGACCGTGATTACCAGAGGAATCCCATTTTCAAGTTTACTTCTGATACCCCATTAGTCACCGTCCAAAATTGGGCAGAAAGGGGTTATTCTGTTGTCAATGTTCAGTGCAAGGATCGAATTAAGCTTTTGTTTGATGTCGTGTGCAATTTGACAGACATGGAATATGTTGTGTTCCATGCAACTATTAAGACAACTATCGACCAAGCGTATCTGGAGTTTTATATAAGACACAAGGATGGCACCCCAATTAGTTCAGAGCCAGAGCGCCATCGTGTGATTCAATGCTTGCAAGCTGCAGTGGAGAGAAGGGCATCTGAGGGTGTGAGGCTAGAATTATGCACCGAAGACAGGCAGGGACTTCTAGCAGAGGTGATGAGAACGTTTCGGGAGAATGGGCTGAATGTGACAAGGGCCGAAATATCTACCATTGATGACATGGCATCAAATGTTTTCTATGTAACGGATGCAATAGGATACCCAGCTGATCCAAAAATCATAGAATCTGTAAGGCAAAAAGTTGGGTTAAGCAATTTAAAAGTGAAGGAGTTGCCATTCGTGTGCCATCAGAAGACAGAGACGGAAGATCAACCAGTTGGGGTTGGTGGGGCAGTGTTGTTGTGTCTGGGGAGCCTCGTGAGAAGGAATCTTTACAATTTGGGTTTGATCAAATCTTGTTCTTAA 1326 0.4397 MEWPACTDEYEKLVIRMSTPRVVIDNAVCSTATIVKVDSARKHGILLDAVQVLSDLNLLIKKAYISSDGRWFMDVFHVTDQNGNKLTDESVLSYIEQSLGSVHNGKTNHSNGLTILELTGTDRVGLLSEVFAVLAELQCDVVDAKVWTHNGRIASLIYVKDCNSGTLIEDSQKISRIEARLRNVLKGDNDIRSAKTSVTNAVVHTERRLHQMMYADRDYQRNPIFKFTSDTPLVTVQNWAERGYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHATIKTTIDQAYLEFYIRHKDGTPISSEPERHRVIQCLQAAVERRASEGVRLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTIDDMASNVFYVTDAIGYPADPKIIESVRQKVGLSNLKVKELPFVCHQKTETEDQPVGVGGAVLLCLGSLVRRNLYNLGLIKSCS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1568 441 Gene3D - 113 209 - -
Ssu6g1568 441 Gene3D - 322 390 - -
Ssu6g1568 441 SUPERFAMILY ACT-like 111 186 IPR045865 -
Ssu6g1568 441 SUPERFAMILY ACT-like 320 392 IPR045865 -
Ssu6g1568 441 SUPERFAMILY ACT-like 29 102 IPR045865 -
Ssu6g1568 441 CDD ACT_ACR_2 114 187 - -
Ssu6g1568 441 Pfam ACT domain 325 375 IPR002912 -
Ssu6g1568 441 Pfam ACT domain 114 162 IPR002912 -
Ssu6g1568 441 ProSiteProfiles ACT domain profile. 115 192 IPR002912 -
Ssu6g1568 441 PANTHER [PROTEIN-PII] URIDYLYLTRANSFERASE-RELATED 1 439 - -
Ssu6g1568 441 CDD ACT_ACR_3 244 318 - -
Ssu6g1568 441 CDD ACT_ACR_4 322 393 - -
Ssu6g1568 441 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 439 IPR040217 -
Ssu6g1568 441 ProSiteProfiles ACT domain profile. 324 404 IPR002912 -
Ssu6g1568 441 CDD ACT_ACR_1 32 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1568 Ssu-Chr6 25821133 25823637 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1568 - - gmx:100794729 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1907 4 35401878 35404385 Ssu6g1568 6 25821133 25823637 ECH
Ssu3g0207 3 3704491 3707014 Ssu6g1568 6 25821133 25823637 ECH
Ssu6g1568 6 25821133 25823637 Ssu6g1568 6 25821133 25823637 ECH