Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1907 ATGGAAGATGAATATGCTAAGCTTATAAGGAGGATGAACCCACCAAGGGTTGTGATTGACAACAATGCCTGTGAAAACGCCACTGTTATTCAGGTTGACAGTGTCAACAAACATGGGATTCTCCTGGATGTTGTCCAAGTTATTTCAGATATGAACCTTGTAATAACAAAGGCCTACATCTCCTCTGATGGGGTGTGGTTCATGGATGTGTTTAATGTGATTGATCATAATGGAAACAAGATCAGAGATAAGGAAGTCATTGATTATATTCAAAGGagACTTGAAAACAATCCCAGCTTTGCACCCTCACTGAGAGAATCTGTTGGGGTTGTACCTACTGAAGAGCACACCGTAATTGAACTTACTGGCACAGACAGGCCTGGGTTACTATCTGAAATATGTGCGGTTCTCACAGACCTTCACTGTAATGTGGTGACTGCTGAGATATGGACACATAATACTAGGGCTGCAGCTGTAGTTCACGTGACGGATGATTCCAGTGGCTGTGCCATCAAGGATCCGTCTCGCCTCTCTACAATAAGGGATTTGCTTTCTAATGTCCTTAGGGGAGTGATGATCCAAAGACCGCAAAAACGACACTTTCACCTCTTGGAGTTACAAATAGGGACAGAAGATTACATCAGATTATGTTTGCTGACAGGGACTATGAAAAGATTGAAAGAGCAGGACGGGGGGGACTCAGAGATAGAGATAAACGCCCACTCCCTCATGTAA 735 0.434 MEDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYISSDGVWFMDVFNVIDHNGNKIRDKEVIDYIQRRLENNPSFAPSLRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTIRDLLSNVLRGVMIQRPQKRHFHLLELQIGTEDYIRLCLLTGTMKRLKEQDGGDSEIEINAHSLM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1907 244 CDD ACT_ACR_2 117 190 - -
Ssu4g1907 244 SUPERFAMILY ACT-like 24 95 IPR045865 -
Ssu4g1907 244 SUPERFAMILY ACT-like 112 190 IPR045865 -
Ssu4g1907 244 Gene3D - 112 197 - -
Ssu4g1907 244 ProSiteProfiles ACT domain profile. 29 108 IPR002912 -
Ssu4g1907 244 ProSiteProfiles ACT domain profile. 118 199 IPR002912 -
Ssu4g1907 244 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 191 IPR040217 -
Ssu4g1907 244 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR6 1 191 - -
Ssu4g1907 244 Pfam ACT domain 28 79 IPR002912 -
Ssu4g1907 244 Pfam ACT domain 117 166 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1907 Ssu-Chr4 35401878 35404385 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1907 - - gmx:100818506 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1907 4 35401878 35404385 Ssu6g1568 6 25821133 25823637 ECH
Ssu4g1907 4 35401878 35404385 Ssu4g1907 4 35401878 35404385 ECH
Ssu3g0207 3 3704491 3707014 Ssu4g1907 4 35401878 35404385 ECH