Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0207 ATGGATTGTTGGtcctctcctctccctctccaTGATGAATTCGAGAAGCTTGTCATTCGAATGAACCCTCCCAGAGTTGCTGTGGATAACATTTCCAGCAGAACAGCCACTGTCATAAAGGTTGATAGCGCAAACAGGCGCGGGAGCTTGTTGGAAGTGGTTCAGGTTCTCACTGACATGAATCTCAGTGTTAGAAGAGCTTACATTTCCTCTGATGGAGAATGGTTCATGGATGTTTTTCATGTCACGGATCAAAATGGGAAAAAGTTTCTGCAAGATGATGTAGCTGATCGCATTCAACAGTCACTGGGTCCAAGAGCCTCTAGTTTCCGATCCTTGAGAAGGTCTGTTGGGGTCCAAGCTGCAGCAGAACATACAACCATTGAATTAACTGGAAGAGACAGGCCAGGATTGCTATCAGAAGTGTTTGCTGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTCTGGACCCACAATTCAAGAATGGCATCTGTTGTTTACATCACAGATGAGGCGACAGGATTGTCCATCGACAATCCAGATCGCCTTGCCAAGATTAAGCAGCTTCTACTGTATGTGCTGAAAGGAGACATAGATAAGAAGAGTGCCAACACTGCTGTTTCTGTTGGTTCTACTCACAAGGACAGGAGGCTGCATCAGTTGATGTATGCAGACCGAGATTATGACATAGATGATGGGGATTCTGGGTCAACAAGTGACAGGAGCAAGCTCCTTGTAAATGTTGATGATTGCATAGATAAGGGATATACTGTTGTGAATTTGAGGTGTCCAGACAGACCAAAGTTACTGTTTGATACAGTGTGCACACTCACAGACATGCAATATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTGGATGGAAGTCCTATCAGTTCTGAAGCAGAAAGGCAAAGAGTGATTCATTGTTTGGAGGCTGCTATTAGGAGACGAACTTCTGAGGGCTTAAGGCTAGAACTATGTGGGGAAGACAGGGTTGGCCTTCTGTCTGATGTAACTCGCATCTTTAGAGAAAATGGTCTTTCAGTCAACCGTGCTGAAGTTACAACCAGGGGCACCCAAGCCATGAATGTTTTCTATGTGACTGATGTATCTGGAAATCCAGTTAAGAGTGCAACAATTGAAGCAGTTCGAAAAGAGATTGGCTTAACCATACTGTATGTTAAAGATGATGATTTCCGCTCAAAACCTCCATCCCAAGAGAGTGGAAAATTCTCTTTGTCTAATCTCTTTAGATCAAGTTCTGAGAAGTTTCTCTACAACTTGGGTCTGATGAAGTCCTATTCTTGA 1356 0.4292 MDCWSSPLPLHDEFEKLVIRMNPPRVAVDNISSRTATVIKVDSANRRGSLLEVVQVLTDMNLSVRRAYISSDGEWFMDVFHVTDQNGKKFLQDDVADRIQQSLGPRASSFRSLRRSVGVQAAAEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEATGLSIDNPDRLAKIKQLLLYVLKGDIDKKSANTAVSVGSTHKDRRLHQLMYADRDYDIDDGDSGSTSDRSKLLVNVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHVDGSPISSEAERQRVIHCLEAAIRRRTSEGLRLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRGTQAMNVFYVTDVSGNPVKSATIEAVRKEIGLTILYVKDDDFRSKPPSQESGKFSLSNLFRSSSEKFLYNLGLMKSYS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0207 451 SUPERFAMILY ACT-like 124 193 IPR045865 -
Ssu3g0207 451 CDD ACT_ACR_4 337 408 - -
Ssu3g0207 451 Gene3D - 335 411 - -
Ssu3g0207 451 CDD ACT_ACR_2 126 199 - -
Ssu3g0207 451 SUPERFAMILY ACT-like 334 404 IPR045865 -
Ssu3g0207 451 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Ssu3g0207 451 ProSiteProfiles ACT domain profile. 339 415 IPR002912 -
Ssu3g0207 451 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 449 IPR040217 -
Ssu3g0207 451 PANTHER OS08G0515400 PROTEIN 2 449 - -
Ssu3g0207 451 CDD ACT_ACR_3 259 333 - -
Ssu3g0207 451 Pfam ACT domain 340 390 IPR002912 -
Ssu3g0207 451 Pfam ACT domain 37 86 IPR002912 -
Ssu3g0207 451 Pfam ACT domain 126 174 IPR002912 -
Ssu3g0207 451 Gene3D - 125 196 - -
Ssu3g0207 451 ProSiteProfiles ACT domain profile. 38 118 IPR002912 -
Ssu3g0207 451 SUPERFAMILY ACT-like 34 104 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0207 Ssu-Chr3 3704491 3707014 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0207 - - gmx:100798999 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0207 3 3704491 3707014 Ssu3g0207 3 3704491 3707014 ECH
Ssu3g0207 3 3704491 3707014 Ssu6g1568 6 25821133 25823637 ECH
Ssu3g0207 3 3704491 3707014 Ssu4g1907 4 35401878 35404385 ECH