Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1021 ATGGTGATGCTTACTGCTTGGATCACTGACCTTTTCGCTTGTATGGGTGGTTGTTTTGGATGCTGTATGAAACCCACACCAATTATTGCTGTGGATGAGCCGGCAAAGGGACTAAGAATTCAGGGACAGACAGTGAGAAAACCAAACATATCAGATGGTTTCTGGAGTTCAAGCACTTGTGATCTGGATAACAGCAACTTTCAATCTCAGAGAAGTATCTCGTCTGTCGGTACATTAAATCAAATTCTCTATCATAGTGGTGGAACTTCTACTGCAGGTGCCAATCCTGAATTTGTAAACCCAGGTCTTCTTCTCTGGAATGAGAGCAGGCTTCAGTGGATTGGAAGTGGCAAATCTAGGAAGCATAGCCAACAAAAAAGAGAACCAAGACTAAATTGGAATGGTACCTATGAAAGTTTGCTTGGGACTAGACAACCTTTCCCCAAGCCCATACCTTTATCAgAAATGGTCGAATTCCTGGTGGATGTTTGGGAGCGTGAAGGAATGTATGGTTGA 516 0.4302 MVMLTAWITDLFACMGGCFGCCMKPTPIIAVDEPAKGLRIQGQTVRKPNISDGFWSSSTCDLDNSNFQSQRSISSVGTLNQILYHSGGTSTAGANPEFVNPGLLLWNESRLQWIGSGKSRKHSQQKREPRLNWNGTYESLLGTRQPFPKPIPLSEMVEFLVDVWEREGMYG 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1021 171 PANTHER OS07G0479600 PROTEIN 3 170 - -
Ssu6g1021 171 PANTHER DUF4050 FAMILY PROTEIN 3 170 - -
Ssu6g1021 171 Pfam Protein of unknown function (DUF4050) 131 170 IPR025124 -
Ssu6g1021 171 Pfam Protein of unknown function (DUF4050) 60 129 IPR025124 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1021 Ssu-Chr6 16688742 16691562 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1021 - - gmx:100813288 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1021 6 16688742 16691562 Ssu4g3431 4 84946288 84948306 ECH
Ssu6g1021 6 16688742 16691562 Ssu5g0577 5 12777410 12780822 ECH
Ssu6g1021 6 16688742 16691562 Ssu6g1021 6 16688742 16691562 ECH