Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0577 ATGTATTCTAGGGTTGGATGCTTTGGGCAGAAACCCTGCTGCCCTTCATTTTTAGTGTTACGTGGTTCTTGGTTTCGTGTTCTTGTGGTTTCTGCCATGGATAAGTTAAGGCTCAAATGCAAGGGGCTTTTCTGTAACATAGGTTGTCTTGGATGCTGCAAAAAAACTCCAGGAATTATTGCAATGGATGAAGTATCTAACGGACTAGGAACTCAAGGTCAAAGAGTGACTAAAGTGGATGGATCAGAAGATTGCTGGAGCAGCAGCACCTTTGAATTAGACCATAGTGCAGCTCAGTCGCAGAGAAGCATCTCATCAACTGGAATATCAAATAATCCTTCTGATCCTCAAAGTAGAGGAGGCAGTCAAAGTGGTCCTCCTGAATTTGTCAACCATGGGTTTCTTCTCTGGAACCAGATAAGGCAACAGTGGGTTGGAAATAAAAGGTCCGACAATCTCCCAGAAATTCGAGAAGCAAGAATAAGTTCCAACGCCACCTACGACAACCTACTTGGGAACAACAAGCCCTTTCCCCAACCCATCCCTCTGAGAgAAATGGTTGACTTTCTTGTTGATATTTGGGAGCAAGATGGACTGTATGACTGA 606 0.4389 MYSRVGCFGQKPCCPSFLVLRGSWFRVLVVSAMDKLRLKCKGLFCNIGCLGCCKKTPGIIAMDEVSNGLGTQGQRVTKVDGSEDCWSSSTFELDHSAAQSQRSISSTGISNNPSDPQSRGGSQSGPPEFVNHGFLLWNQIRQQWVGNKRSDNLPEIREARISSNATYDNLLGNNKPFPQPIPLREMVDFLVDIWEQDGLYD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0577 201 PANTHER OS07G0479600 PROTEIN 2 201 - -
Ssu5g0577 201 Pfam Protein of unknown function (DUF4050) 162 201 IPR025124 -
Ssu5g0577 201 Pfam Protein of unknown function (DUF4050) 89 157 IPR025124 -
Ssu5g0577 201 MobiDBLite consensus disorder prediction 102 125 - -
Ssu5g0577 201 PANTHER DUF4050 FAMILY PROTEIN 2 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0577 Ssu-Chr5 12777410 12780822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0577 - - gmx:100818696 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0577 5 12777410 12780822 Ssu5g0577 5 12777410 12780822 ECH
Ssu6g1021 6 16688742 16691562 Ssu5g0577 5 12777410 12780822 ECH