Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0936 ATGCTATGCTTCACATCAAAGTCAaactcctctttctttcttccccTCTTCtgcctctctctctttctcttgtcCGCTTCTGGAACATTCTCTCGTTTCGACACTCTACCTGCACCAGatgGCGTTGAAGTTGTTGGTGAGAAACAGCACGAGGAGGTGGTGCCATGGAAGACGAGGAGATCAATGGCAGAAGTTGCACATGTGAAGAATACGGCTCTCGTGCTTGCTAAGGAAAGAACTCACCGGAAAGATTTGTTTAACGGTTTTGAACTTTACACCGGTGGTTGGAATATCAGCAATGTCTATTATCTCACGTCAGTTCTTTCTACTGCAGTTCCTTTTTTAGCTGTGGCTGTAGTCTGGTTcgtgatttttggattttttttacttatcttCTGTGCATGTTGCTGCTTCTGTAACGGAGAGCCAAGCGGCTATTCTAAATCAATCCATCATTTGTCCTTCATCTTCCTTATCCTCTGCACCATTGCGGCAATAGGTGGATGCGTTGTCCTGTACACTGGTCAGGGGAGGTTTCATGGAAGCACCTCGAACACACTTGATTACGTTGTGAATCAGGCTCAATTCATAGCTGAAAACCTCACAAACGTGTCAAGTTATTTTGATTCAGCTAAGCAGCTTGTGAGTGGGATTCCTCTGCCACTAGATCTTGGAACGGACATTGATGATGTCAAAAGGAAAATCATCACTGCTGCTGATTCTCTCTCCAAGAAGACTAAAGATAATTCAAAAATGATACACCGACTCATAGATGGAGTGAGACTGGCTCTTATTATTGTTGCTGCTGTTATGCTCTTTGTTGCATTTCTCGGATTCTGTatgtttgattttggttttgtcTTTTTCGTTTTCTTACTCTATGCTAAATTTATTGGATGGATTCTTGTTGCTGGCACCCTGATACTTTGTGGTGCATTTCTTTTTGTTCATAAtgtGACTGCCGATACATGTGTTGCCATGGACGAGTGGGTTCTGAACCCCACTGCCCATACTGCCTTGGATGACATTCTTCCATGCGTGGAAAAGGCAACTGTCGTGGAAACCTTTTTACGAAGCAAGACCGTGACATATACGGTTGTTGAATTATTTGACCAAATCATTTCCAATGTCACAAATGGAAATACCGCAGCTTACAATCAATCAGGTCCCCTCGTGCCTCTTCTCTGCAATCCATTTAACAGCGACTTCACACCTCGCCAGTGTGCGCAGGGGAAGTTACATTCAAAAACGCCACCGAGATTTTTGTGTGAATCTCAGGTGTGGAAGAATTATACTTGCCAGGTTTCCTTGTCTGGACAATGTACGAGTCAAGGTCGTTTGACACCCGCCATATACACCAAACTGGCAGCTGCAGTGAATGTGACCTATGGTTTATTTCATTATGGCCCATTTTTCGTTGACTTAGTAGATTGCAGTTTTGCCCGAAAAACATTCGCAAACATTAGCAGCAATTATTGTCCTAGTCTACGGAGATATACTGAATGGGTTTATTTGGGGTCAGTTGTGGTATCTGCAGCCGTAATGCTCTCTTTGATATTGTGGATCGTCTATGTCAGAGAGCGGCGGCGGCGTCTTCACACCGACTCTCCTTAG 1614 0.4151 MLCFTSKSNSSFFLPLFCLSLFLLSASGTFSRFDTLPAPDGVEVVGEKQHEEVVPWKTRRSMAEVAHVKNTALVLAKERTHRKDLFNGFELYTGGWNISNVYYLTSVLSTAVPFLAVAVVWFVIFGFFLLIFCACCCFCNGEPSGYSKSIHHLSFIFLILCTIAAIGGCVVLYTGQGRFHGSTSNTLDYVVNQAQFIAENLTNVSSYFDSAKQLVSGIPLPLDLGTDIDDVKRKIITAADSLSKKTKDNSKMIHRLIDGVRLALIIVAAVMLFVAFLGFCMFDFGFVFFVFLLYAKFIGWILVAGTLILCGAFLFVHNVTADTCVAMDEWVLNPTAHTALDDILPCVEKATVVETFLRSKTVTYTVVELFDQIISNVTNGNTAAYNQSGPLVPLLCNPFNSDFTPRQCAQGKLHSKTPPRFLCESQVWKNYTCQVSLSGQCTSQGRLTPAIYTKLAAAVNVTYGLFHYGPFFVDLVDCSFARKTFANISSNYCPSLRRYTEWVYLGSVVVSAAVMLSLILWIVYVRERRRRLHTDSP 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0936 537 PANTHER TRANSMEMBRANE PROTEIN 43 535 - -
Ssu6g0936 537 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 43 535 IPR040283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0936 Ssu-Chr6 15118578 15122048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0936 - - gmx:100809538 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0936 6 15118578 15122048 Ssu1g3486 1 89228093 89231500 ECH
Ssu6g0936 6 15118578 15122048 Ssu6g0936 6 15118578 15122048 ECH
Ssu6g0936 6 15118578 15122048 Ssu1g1772 1 44108914 44122869 PCT