Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0718 ATGTCCGTTTCTATGAGAGATTTGGATCCAGCTTTCAAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTTCCATCCCTCAATCTTCTTATGGAAAGTTTTTCACTGGTGACTCCTATATGATCTTGAAGACAACCTCTTTAAAAAGTGGTGCTCTGCGTCATGATATCCATTATTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCAGCCATCAAGACAGTGGAGTTGGATGCAGCTCTAGGAGGACGGGCTGTTCAGTATCGCGAAGTACAGGGTCATGAAACTGAAAAGTTCCTGTCTTATTTCAAACCATGTATCATACCTCAAGAAGGTGGAGCTGCCTCAGGTTTTAAACATGTTGAGGCTGAAGAACATAAGACACGGTTGTTTGTATGCAAAGGGAAACATGTGGTACATGTCAAAGAGGTTCCTTTTGGTCGATCTTCACTGAACcatgatgatatttttattctggATACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCAACTATTCAAGAAAGGGCCAAAGCATTGGAAGTTGTACAGTATATTAAGGATACGTACCATGATGGGAAATGTGAGATAGCTTCCATTGAGGATGGAAAGTTGATGGCTGATTCTGAAACTGGAGAATTCTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAAAACAGTCAGCGATGATGATAAGCTTGCTAATTCTCATCCTCCAAAGCTACTTTGTGTTGACAAGGGGAAGGCAGAACCTATTGAAACCGATTCTTTGACAAAGGAATTACTGGACACAAACAAATGCTATATTCTAGATTGTGGGTTAGAAGTTTTTGCATGGATGGGAAGAAACACACctcttgatgaaagaaaaagtgcAAGTGGAGCTGCAGATGAGTTAGTCAGAGGCACTGGTCGACCAAAGTCCCATATAATTCGTGTAATTGAAGGATTTGAAACAGTAATGTTCAGGTCCAAGTTTGATTCTTGGCCTCAGGCAACTCATGTAACAATGTCTGAAGATGGTCGTGGCAAGGTAGCAgCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCTTGAAAGCTGAGCCCGTAAAAGAAGAACCTCAACCCCACATAGATTGCACAGGACATTTGCAGGTTTGGCGTGTGAATGGTCAGGAAAAGATTCTTCTTCAACCCACTGATcagtcaaaattttataatggaGATTGCTACATCTTTCTATATTCATATCCTGGAGAAGATAAGGAAGAGTATCTTATAGGAACATGGATTGGAAAGAATAGTGTTGAGGAAGAGAGAGCTTCAGCTCTTTCACTAGCTAGCAAAATGGTTGAGTCAATGAAGTTTCTTCCTTCCCAgGCTCGTATCTATGAAGGCAATGAACCAATTCAATTTCATGCCATCCTCCAAAGCTATATTGTTTTTAAGGGTGGACTTAGTGATGGATACAAGAATTACATTGCGGAGAAGGAAATTCCAGATGACACATACAGTGAGGATGGTGTTGCATTATTCCGCATCCAGGGCTCCGGACCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCTCTTATTGCTACTTACTTCACAGTGGGCTCACTCTTTTTACTTGGTCTGGAAGTTTAACAACTTCAGATGATCAGGAGCTTGTTGAGAGAATGCTGGATTTGATTAAGCCGGATTTACAATGCAAACCACAAAAGGAAGGTGTAGAATCGGAACATTTTTGGGATTTGTTGGGAGGAAAATCAGAATATTCCAGTCAAAAGATCACGAGGGATGTTGAAAATGATCCTCACCTATTTTCTTGCAACTTCTCAGAAGGAAATTTAAAGGTGGCAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTACATCTTGGATTGTCACTCTGAAATCTTTGTCTGGGTTGGCCAGCAGGTTGACTCAAAGAGTAGAATGCAGGCTCTAACGATTGGTGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAACATTATCTCGTGAAGCTCCAATATATATTGTCATGGAAGGTAGTGAGCCACCTTTCTTCACTCGCTTCTTTAAGTGGGAGTCTGCAAAATCTGCAATGCTGGGAAACTCGTTTCAGAGGAAGCTTGCAATCGTGAAAAATGGGGGTACGCCACTCATGGTTAAACCTAAACGAAGAACATCAGTATCTTATGGGGGAAGGTCTGGTGGTGTGCCAGATAAATCCCAGCGTTCCCGCAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCAGCCTTTAATGCACTAGCAGCTAATTTTGAGAACCCAAATGCTAGGAACCTTTCAACTCCACCTCCAATGATTAGAAAACTGTACCCAAAATCTGTGACACCGGATACAACAAAAATGGCACCCAAATCTTCAGCCATAGCTCATCTTACTTCTAGTTTTGAACAATCATCAGCACAAGAAAATTTGATTCCTCGCTCACAAAAAGCGAGTTCATTTACACGCAAATCAAATCCTGAGACAAGTGACGAGGAGGGTTCTATCAACAGCAGAATAGAATCTCTTATCATACAGGAGGACGTGAAAGAGGGTGAAGCCGAAGATGATGAAGGTCTCCCAGTTTACCCATATGAACGCATTAACACAGCTTCTACAGATCCTGTAACAGATATTGACGTGACTAAACGAGAGGCTTATCTGTCATCTGCAGAGTTCCAAGAGAAATTTGGGATGGCTAAGAATGAATTTTACAAGTTGCCAAAATGGAAACAGAACAAACTCAAAATGGCCGTTCAGTTGTTCTGA 2883 0.4093 MSVSMRDLDPAFKGAGQKAGLEIWRIENFNPVSIPQSSYGKFFTGDSYMILKTTSLKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCKGKHVVHVKEVPFGRSSLNHDDIFILDTESKIFQFNGSNSTIQERAKALEVVQYIKDTYHDGKCEIASIEDGKLMADSETGEFWGCFGGFAPLPRKTVSDDDKLANSHPPKLLCVDKGKAEPIETDSLTKELLDTNKCYILDCGLEVFAWMGRNTPLDERKSASGAADELVRGTGRPKSHIIRVIEGFETVMFRSKFDSWPQATHVTMSEDGRGKVAALLKRQGLDVKGLLKAEPVKEEPQPHIDCTGHLQVWRVNGQEKILLQPTDQSKFYNGDCYIFLYSYPGEDKEEYLIGTWIGKNSVEEERASALSLASKMVESMKFLPSQARIYEGNEPIQFHAILQSYIVFKGGLSDGYKNYIAEKEIPDDTYSEDGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYLLHSGLTLFTWSGSLTTSDDQELVERMLDLIKPDLQCKPQKEGVESEHFWDLLGGKSEYSSQKITRDVENDPHLFSCNFSEGNLKVAEIYNFSQDDLMTEDIYILDCHSEIFVWVGQQVDSKSRMQALTIGEKFLEHDFLLETLSREAPIYIVMEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAIVKNGGTPLMVKPKRRTSVSYGGRSGGVPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENPNARNLSTPPPMIRKLYPKSVTPDTTKMAPKSSAIAHLTSSFEQSSAQENLIPRSQKASSFTRKSNPETSDEEGSINSRIESLIIQEDVKEGEAEDDEGLPVYPYERINTASTDPVTDIDVTKREAYLSSAEFQEKFGMAKNEFYKLPKWKQNKLKMAVQLF 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0718 960 SUPERFAMILY Actin depolymerizing proteins 129 246 - -
Ssu6g0718 960 SMART VILL_6 137 234 IPR007122 GO:0051015
Ssu6g0718 960 SMART VILL_6 19 117 IPR007122 GO:0051015
Ssu6g0718 960 SMART VILL_6 392 489 IPR007122 GO:0051015
Ssu6g0718 960 SMART VILL_6 519 606 IPR007122 GO:0051015
Ssu6g0718 960 SMART VILL_6 622 719 IPR007122 GO:0051015
Ssu6g0718 960 SMART VILL_6 254 344 IPR007122 GO:0051015
Ssu6g0718 960 Gene3D Severin 7 132 IPR029006 -
Ssu6g0718 960 PANTHER VILLIN 1 960 IPR007122 GO:0051015
Ssu6g0718 960 Gene3D Severin 133 246 IPR029006 -
Ssu6g0718 960 CDD gelsolin_S5_like 517 608 - -
Ssu6g0718 960 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Ssu6g0718 960 SUPERFAMILY Actin depolymerizing proteins 511 615 - -
Ssu6g0718 960 MobiDBLite consensus disorder prediction 747 781 - -
Ssu6g0718 960 SUPERFAMILY VHP, Villin headpiece domain 885 960 IPR036886 GO:0003779|GO:0007010
Ssu6g0718 960 MobiDBLite consensus disorder prediction 839 875 - -
Ssu6g0718 960 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Ssu6g0718 960 CDD gelsolin_S6_like 621 718 - -
Ssu6g0718 960 Gene3D Severin 247 356 IPR029006 -
Ssu6g0718 960 Gene3D Severin 382 517 IPR029006 -
Ssu6g0718 960 ProSiteProfiles Headpiece (HP) domain profile. 895 960 IPR003128 GO:0003779|GO:0007010
Ssu6g0718 960 CDD gelsolin_S4_like 388 485 - -
Ssu6g0718 960 Gene3D Villin headpiece domain 898 960 IPR036886 GO:0003779|GO:0007010
Ssu6g0718 960 SMART VHP_1 925 960 IPR003128 GO:0003779|GO:0007010
Ssu6g0718 960 Pfam Gelsolin repeat 636 712 IPR007123 -
Ssu6g0718 960 Pfam Gelsolin repeat 269 337 IPR007123 -
Ssu6g0718 960 Pfam Gelsolin repeat 409 482 IPR007123 -
Ssu6g0718 960 Pfam Gelsolin repeat 150 216 IPR007123 -
Ssu6g0718 960 Pfam Gelsolin repeat 29 111 IPR007123 -
Ssu6g0718 960 Pfam Villin headpiece domain 925 960 IPR003128 GO:0003779|GO:0007010
Ssu6g0718 960 CDD gelsolin_S3_like 254 343 - -
Ssu6g0718 960 Gene3D Severin 614 734 IPR029006 -
Ssu6g0718 960 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Ssu6g0718 960 CDD gelsolin_S1_like 12 124 - -
Ssu6g0718 960 PANTHER VILLIN-4 1 960 - -
Ssu6g0718 960 CDD gelsolin_S2_like 138 232 - -
Ssu6g0718 960 Gene3D Severin 518 613 IPR029006 -
Ssu6g0718 960 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Ssu6g0718 960 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Ssu6g0718 960 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Ssu6g0718 960 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Ssu6g0718 960 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Ssu6g0718 960 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Ssu6g0718 960 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Ssu6g0718 960 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Ssu6g0718 960 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 255 426 IPR036180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0718 Ssu-Chr6 11328092 11341436 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0718 - - gmx:100807762 1787.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0718 6 11328092 11341436 Ssu6g0718 6 11328092 11341436 ECH
Ssu6g0718 6 11328092 11341436 Ssu1g1783 1 44462890 44465541 PCT
Ssu1g1465 1 33814250 33831090 Ssu6g0718 6 11328092 11341436 PCT