Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1465 ATGGCCGTTTCCATGAGAGATTTGGATTCAGCTTTCCAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATGCAGTTCCTGTCCCAAAGTCCTCTTATGGGAAGTTTTTCACTGGAGACTCCTATGTGATCTTAAAGACAACTGCATCAAAAAGTGGTGCTCTGCGTCATGACATCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCGGCCATCAAGACAGTTGAGCTGGATGCAGCTCTTGGAGGACGTGCTGTCCAGTATCGTGAAGTACAAGGCCATGAAACTGAAAAGTTCCTTTCTTATTTCAAACCATGTATTATTCCTCAAGAAGGTGGAGTTGCTTCTGGTTTTAAACATGCCGAGGCTGAAAAACATAAGACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTACATGTCAAAGAGGTTCCATTTGCTAGAGCTTCACTCAACCATGATGATATTTTTGTTCTGGATACcgaattgaaaattttccaatttAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAGGATACCTACCATGAAGGGAAATGTGAGGTAGCTGCTGTTGAGGATGGAAAGTTGATGGCTGATCCTGAAACTGGGGAATTCTGGGGTTTCTTTGGGGGATTTGCTCCTCTTCCACGAAAAACAGCCAGTGATGATGATAAGCCTACTGATTCTCGCCCTCCGAAGCTTCTTTGTGTTGAAAAGGGACAGGCAGAACCTGTTGAGACTGATTCTTTGAAAAGGGAATTACTAGACACGAATAAATGCTATATTCTTGATTGTGGGTTTGAAGTGTTTGTCTGGATGGGAAGAAATACCTctcttgatgaaagaaaaagtgcAAGTGGAGTTGCAGATGAGTTAGTCAGTAGCACTGATCAACTGAAACCGCAAATAATTCGTGTGATAGAAGGATTTGAAACAGTGATGTTCAGGtccaaatttgattcttggCCTCAGACAACTAATGTAACAGTATCTGAAGATGGTCGTGGCAAGGTAGCTGCACTTCTAAAACGTCAAGGAGTGAATGTAAAGGGTTTGTTGAAAGCTGATCCAGTAAGGGAAGAACCCCAACCCTACATAGATTGCACAGGACATTTGCAGGTTTGGCGAGTGAACGGTCAGGAAAagattcttcttcaagtttctgATCAGTCAAAATTTTATAGTGGAGATTGCTACATCTTTCGATATACATGTCCTGGAGAGGATAAAGAAGATTGTCTTATAGGAACGTGGATTGGAAAGAAAAGTGTTGaggaagaacgAGCTTCAGCTAATTCATTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTGGCTTCCCAGGCTCGTATATATGAAGGCAATGAACCAATTCAATTTCATTCTATCCTCCAAAGCTTCATTGTTTTTAAGGGTGGGCTTAGTGATGGATACAAGACTTACATTGCGGAAAAGGAAATTCCGGATGAAACATACAATGAGAATGGTGTTGCATTATTCCGCATCCAGGGCTCTGGACCAGACAACATGCAAGCTATCCAAGTTGAACCAGTTGCATCTTCCTTGAATTCCTCTTATTGTTACATACTTCATAATGGGCCTGCTGTTTTCACTTGGTCTGGAAGTTCTACAAGTGCAGAAGACCAGGAACTTGTTGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCCAAACCACAAAGGGAAGGTTCCGAATGTGAACAGTTTTGGGATTTGTTAGGAGGAAAATCAGAATATCCCAGTCAAAAGATTCTTAGAGAGGCTGAAAATGATCCTCACCTATTTTCTTGTCACTTCTCGAAGCAATATTTTCAGGTGACAGAGGTATACAACTTCTCCCAGGATGATTTGATGACAGAAGACATTTTCATCTTGGATTGTCACTCGGAAATCTTTGTCTGGGTTGGCCAGCAGGTTGACTCCAAGAGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAAAATTATCTCATGTAGCTCCAATATATGTTGTCATGGAAGGGAGTGAGCCACCTTTCTTCACACGCTTCTTTAAATGGGATTCTGCAAAATCTGCAATGCTGGGAAACTCATTTCAAAGGAAGCTTACAATTGTGAAAAGTGGGGGTACTCCACATGTGGATAAACCCAAACGGAGAACACCAGTATCTTATGGGGGAAGGTCAAGTAGTGTGCCAGATAAATCCCAGCGTTCCTCCCGCAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGGTCTCCAGCCTTTAATGCCCTAGCAGCTAATTTCGAGAACCCTAATGCTAGGAATCTTTCAACCCCGCCTCCAGTAATTAGAAAGCTGTATCCAAAATCTACACCAGATTCTGCAATACTGGCGCCAAAATCTGCAGCCATAGCTGCACTTAGTTCTTCTTTTGAACAGCCACCTTCAGCACGAGAAAGTATGATACCTCGGTCACTTAAAGTGACTTCAGTAATGCCCAAATCAAACCCTGAGAACAATGACAAGGAGAAATCTGTGAGTAGCAGAGTGGAATCTCTTACCATACAGGAAGATGTGAAAGAGGATGAAGTTGAAGATGAGGAAGGTCTTGTGATTCACCCATATGAACGCCTTAAAATAACATCCGCAGATCCTGTATCAAATATTGATGTGACTAAGCGAGAGACTTATCTATCATCTGCGGAGTTCAAGGAGAAATTTGGGATGTCCAAGGATGCTTTTTACAAGTTACCCAAATGGAAACAAAACAAACTCAAAATGGCTGTTCAGTTGTTCTGA 2886 0.4082 MAVSMRDLDSAFQGAGQKAGLEIWRIENFNAVPVPKSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFKHAEAEKHKTRLFVCRGKHVVHVKEVPFARASLNHDDIFVLDTELKIFQFNGSNSSIQERAKALEVVQYIKDTYHEGKCEVAAVEDGKLMADPETGEFWGFFGGFAPLPRKTASDDDKPTDSRPPKLLCVEKGQAEPVETDSLKRELLDTNKCYILDCGFEVFVWMGRNTSLDERKSASGVADELVSSTDQLKPQIIRVIEGFETVMFRSKFDSWPQTTNVTVSEDGRGKVAALLKRQGVNVKGLLKADPVREEPQPYIDCTGHLQVWRVNGQEKILLQVSDQSKFYSGDCYIFRYTCPGEDKEDCLIGTWIGKKSVEEERASANSLASKMVESMKFLASQARIYEGNEPIQFHSILQSFIVFKGGLSDGYKTYIAEKEIPDETYNENGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGPAVFTWSGSSTSAEDQELVERMLDLIKPNLQSKPQREGSECEQFWDLLGGKSEYPSQKILREAENDPHLFSCHFSKQYFQVTEVYNFSQDDLMTEDIFILDCHSEIFVWVGQQVDSKSRMQALTIGEKFLEHDFLLEKLSHVAPIYVVMEGSEPPFFTRFFKWDSAKSAMLGNSFQRKLTIVKSGGTPHVDKPKRRTPVSYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAANFENPNARNLSTPPPVIRKLYPKSTPDSAILAPKSAAIAALSSSFEQPPSARESMIPRSLKVTSVMPKSNPENNDKEKSVSSRVESLTIQEDVKEDEVEDEEGLVIHPYERLKITSADPVSNIDVTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKLKMAVQLF 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1465 961 Gene3D Severin 388 501 IPR029006 -
Ssu1g1465 961 SUPERFAMILY Actin depolymerizing proteins 10 147 - -
Ssu1g1465 961 PANTHER VILLIN-3-LIKE 1 961 - -
Ssu1g1465 961 Gene3D Severin 7 132 IPR029006 -
Ssu1g1465 961 SMART VHP_1 926 961 IPR003128 GO:0003779|GO:0007010
Ssu1g1465 961 CDD gelsolin_S5_like 517 608 - -
Ssu1g1465 961 CDD gelsolin_S2_like 138 223 - -
Ssu1g1465 961 SUPERFAMILY VHP, Villin headpiece domain 886 961 IPR036886 GO:0003779|GO:0007010
Ssu1g1465 961 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Ssu1g1465 961 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Ssu1g1465 961 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Ssu1g1465 961 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Ssu1g1465 961 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Ssu1g1465 961 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Ssu1g1465 961 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Ssu1g1465 961 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Ssu1g1465 961 ProSiteProfiles Headpiece (HP) domain profile. 896 961 IPR003128 GO:0003779|GO:0007010
Ssu1g1465 961 Pfam Villin headpiece domain 926 961 IPR003128 GO:0003779|GO:0007010
Ssu1g1465 961 Pfam Gelsolin repeat 150 217 IPR007123 -
Ssu1g1465 961 Pfam Gelsolin repeat 637 712 IPR007123 -
Ssu1g1465 961 Pfam Gelsolin repeat 266 337 IPR007123 -
Ssu1g1465 961 Pfam Gelsolin repeat 28 111 IPR007123 -
Ssu1g1465 961 Gene3D Severin 247 357 IPR029006 -
Ssu1g1465 961 Gene3D Severin 517 612 IPR029006 -
Ssu1g1465 961 SUPERFAMILY Actin depolymerizing proteins 137 239 - -
Ssu1g1465 961 Gene3D Severin 133 246 IPR029006 -
Ssu1g1465 961 Gene3D Severin 614 733 IPR029006 -
Ssu1g1465 961 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Ssu1g1465 961 MobiDBLite consensus disorder prediction 860 896 - -
Ssu1g1465 961 CDD gelsolin_S3_like 254 343 - -
Ssu1g1465 961 PANTHER VILLIN 1 961 IPR007122 GO:0051015
Ssu1g1465 961 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 255 425 IPR036180 -
Ssu1g1465 961 SMART VILL_6 622 719 IPR007122 GO:0051015
Ssu1g1465 961 SMART VILL_6 392 489 IPR007122 GO:0051015
Ssu1g1465 961 SMART VILL_6 254 344 IPR007122 GO:0051015
Ssu1g1465 961 SMART VILL_6 19 117 IPR007122 GO:0051015
Ssu1g1465 961 SMART VILL_6 137 234 IPR007122 GO:0051015
Ssu1g1465 961 SMART VILL_6 519 606 IPR007122 GO:0051015
Ssu1g1465 961 MobiDBLite consensus disorder prediction 737 782 - -
Ssu1g1465 961 CDD gelsolin_S4_like 386 485 - -
Ssu1g1465 961 CDD gelsolin_S1_like 12 124 - -
Ssu1g1465 961 SUPERFAMILY Actin depolymerizing proteins 510 613 - -
Ssu1g1465 961 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Ssu1g1465 961 MobiDBLite consensus disorder prediction 755 777 - -
Ssu1g1465 961 Gene3D Villin headpiece domain 899 961 IPR036886 GO:0003779|GO:0007010
Ssu1g1465 961 CDD gelsolin_S6_like 621 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1465 Ssu-Chr1 33814250 33831090 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1465 - - gmx:100808499 1787.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1465 1 33814250 33831090 Ssu6g0718 6 11328092 11341436 PCT