Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2470 ATGTCTACCCAAATTCAAAATGGTTCTTCTCATCACggatcctcatcatcatcacaaCACCCACCCTCCAATCAACAACCACTGAGCCGGTATGAATCACAAAAAAAGCGAGACTGGAACACCTTTGGACAGTACCTGAAGAATCAGAGTCCCCCAGTTCCACTCTCTCAGTGCAACTTCAACCATGTGCTGGATTTCCTTCGGTACCTTGATCAATTTGGGAAGACCAAGGTCCACTTGCACGGTTGCATCTTCTTTGGTCAACCCACTCCTCCTGCACCCTGTGCCTGCCCTCTCAGGCAGGCCTGGGGCAGCCTTGATGCCCTCATCGGCCGGCTTCGTGCCGCCTATGAGGAGCATGGCGGCTCGCCAGAGACTAATCCCTTTGGAGGTGGAGCCATTAGGGTGTACCTGCGTGAGGTGAAGGAGTGTCAGGCAAAGGCTAGAGGGATcctatataagaaaaagaagaagaagagaaacccAATTAAAGGGACTCAAAGTACAAAAGATATCGAGCACCAAGTTTCTTGA 534 0.4644 MSTQIQNGSSHHGSSSSSQHPPSNQQPLSRYESQKKRDWNTFGQYLKNQSPPVPLSQCNFNHVLDFLRYLDQFGKTKVHLHGCIFFGQPTPPAPCACPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGGGAIRVYLREVKECQAKARGILYKKKKKKRNPIKGTQSTKDIEHQVS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2470 177 MobiDBLite consensus disorder prediction 1 30 - -
Ssu5g2470 177 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 4 172 - -
Ssu5g2470 177 PANTHER PROTEIN G1-LIKE2 4 172 IPR040222 -
Ssu5g2470 177 MobiDBLite consensus disorder prediction 155 177 - -
Ssu5g2470 177 MobiDBLite consensus disorder prediction 1 34 - -
Ssu5g2470 177 ProSiteProfiles ALOG domain profile. 30 157 IPR006936 -
Ssu5g2470 177 Pfam ALOG domain 23 143 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2470 Ssu-Chr5 68202558 68203091 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2470 - - gmx:100810655 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2470 5 68202558 68203091 Ssu5g2470 5 68202558 68203091 ECH
Ssu3g1711 3 51818297 51818839 Ssu5g2470 5 68202558 68203091 ECH
Ssu3g2048 3 67603217 67603750 Ssu5g2470 5 68202558 68203091 ECH