Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1711 ATGTCCAGCAAAGGAAAAGACATAGCAGAAGGATCATCAAGATCTTCTTCTGCTGCTGCTGCTTCTgatcatcatcaacaacaacaacaacctctGAGTAGGTATGAATCTCAAAAAAGGAGGGATTGGAACACTTTTGGGCAGTACTTGAGGAACCAGAGGCCACCTGTGGCACTTTCACAGTGCAATTCCAACCAAGTGCTTGATTTCCTAAGGTACTTGGACCAGTTTGGGAAAACAAAAGTGCATGTTCAAGGTTGTCTCTTCTTTGGTCAAGTTGAGCCACCTGGTCCTTGCACTTGCCCTCTTAGACAAGCTTGGGGGAGCCTTGATGCTCTCATTGGAAGGCTAAGAGCTGCATATGAAGAAAATGGAGGCTTGCCTGAGACTAATCCATTTGCTAGTGGTGCCATAAGAGTTTATCTTCGCGAGGTTCGGGACTCTCAAGCTAAGGCAAGAGGGATCccttataagaagaaaaagaagaagaggaatcTCATCAAGGCCAACGGGGACAGCTCAAACTTACCTTTGCAGCAGTAA 543 0.418 MSSKGKDIAEGSSRSSSAAAASDHHQQQQQPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNQVLDFLRYLDQFGKTKVHVQGCLFFGQVEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKRNLIKANGDSSNLPLQQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1711 180 PANTHER PROTEIN G1-LIKE2 2 179 IPR040222 -
Ssu3g1711 180 MobiDBLite consensus disorder prediction 157 180 - -
Ssu3g1711 180 MobiDBLite consensus disorder prediction 1 38 - -
Ssu3g1711 180 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 2 179 - -
Ssu3g1711 180 Pfam ALOG domain 26 147 IPR006936 -
Ssu3g1711 180 MobiDBLite consensus disorder prediction 1 34 - -
Ssu3g1711 180 ProSiteProfiles ALOG domain profile. 34 161 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1711 Ssu-Chr3 51818297 51818839 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1711 - - gmx:100806493 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2048 3 67603217 67603750 Ssu3g1711 3 51818297 51818839 ECH
Ssu3g1711 3 51818297 51818839 Ssu5g2470 5 68202558 68203091 ECH
Ssu3g1711 3 51818297 51818839 Ssu3g1711 3 51818297 51818839 ECH