Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2048 ATGTCCAGCAGTGGCAGTCACGGTGCAGATGGCTCGTCAAGCAACATTCCCGTGGACTACCATCAGCAGGAGCAGAGTCCAGCGACACTTAGCCGCTACGAGTCCCAGAAGAGAAGGGACTGGAACACCTTCGGCCAATACTTGAAGAACCAGAGACCCCCGGTTCCTCTCTCCCAGTGCAATTGCAACCACGTGCTGGATTTCCTTCGGTACCTGGACCAGTTCGGGAAGACCAAGGTTCACCTCCAAGGGTGCATGTTCTACGGGCAGCCAGAACCCCCTGCGCCCTGCACTTGCCCTCTCAGACAGGCCTGGGGCAGCCTCGATGCCCTCATAGGGAGGCTCAGGGCCGCCTACGAGGAAAATGGTGGGTCCCCAGAGACCAACCCTTTCGCCAGCGGCTCCATCCGCGTGTACCTCAGGGAGGTCAGGGAGTGCCAAGCTAAGGCTAGAGGTATACcttacaagaagaaaaagaagacccCAAAGGGAAATGCTGAAGAATCATCAAACTCCTCCATCCACTTCTCTTGA 534 0.5506 MSSSGSHGADGSSSNIPVDYHQQEQSPATLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGSIRVYLREVRECQAKARGIPYKKKKKTPKGNAEESSNSSIHFS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2048 177 MobiDBLite consensus disorder prediction 1 36 - -
Ssu3g2048 177 MobiDBLite consensus disorder prediction 1 32 - -
Ssu3g2048 177 PANTHER DUF640 FAMILY PROTEIN 2 177 - -
Ssu3g2048 177 PANTHER PROTEIN G1-LIKE2 2 177 IPR040222 -
Ssu3g2048 177 Pfam ALOG domain 22 145 IPR006936 -
Ssu3g2048 177 ProSiteProfiles ALOG domain profile. 32 159 IPR006936 -
Ssu3g2048 177 MobiDBLite consensus disorder prediction 151 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2048 Ssu-Chr3 67603217 67603750 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2048 - - gmx:100806134 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2048 3 67603217 67603750 Ssu3g1711 3 51818297 51818839 ECH
Ssu3g2048 3 67603217 67603750 Ssu3g2048 3 67603217 67603750 ECH
Ssu3g2048 3 67603217 67603750 Ssu5g2470 5 68202558 68203091 ECH