Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0637 ATGGAGTTGATGGGGGGTGGAAAGTTTAGGGGGTGCCTTGTTTTTGTGTTCTTTGCTACACTGTTGGTGGGTTTAGTGAATGGAATTGGTGTTAATTGGGGCACACAATTAACACACCCTTTGCCACCATCTACTATAGTGAAAATGCTAAAGGACAATGGTTTTCAGAAAGTTAAGCTTTTTGATGCTGATCCTGATATTTTAAATGCTCTGAAGAAGTCTGGGATTCAGGTGATGGTGGGTATACCAAATGACATGCTCTACACAATGGCTAACAACATGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCACATGTCTCATCTGGGGGAGTAGATATCAGGTATGTTGCGGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGTACCTTCGAAGCCACAACACTTCCAGCTCTTCAAAACATCCAATCAGCTCTTGTGAAAGCTGGTTTAGGCAATCAGGTTAAAGTCACTGTCCCGTTAAACGCCGACGTGTATCAGAGCACACAAGTGCCTTCTGACGGCGACTTTAGGCCAGATATCCATGATCTCATGGTGCAGATTGTCAAGTTCTTGAGCCAGAACAACGCTCCGTTTACCGTGAACATCTATCCTTTTATCAGCCTCTATTCAGACCCCAATTTTCCTGTTGACTATGCCTTTTTCAATGGCTTTCAGTCTCCTATAAATGACAATGGAAGGATCTATGACAATGTCTTTGATGCCAACCATGATACTCTAGTGTGGGCACTGCAGAAGAATGGTTTTGGAAACATGCCTATAATTGTAGGAGAAGTTGGGTGGCCTACTGATGGAGACAGAAATGCAGACCTTCAATACGCGCAACGGTTCAACCAAGGCTTTATGTCGCGCTATATTGCCGGAAAGGGGACACCAATGAGGCCTGGTCCTATCGATGCTTACTTGTTCAGTCTCATAGATGAAGATAGCAAAAGCATTCAGCCAGGTAATTTTGAAAGACATTGGGGGTTGTTTTACTATGATGGACAACCCAAGTACCAGCTTAACATAGGATCAAGGGCCAATGGCTTAGTACGTGCTACTGGGGTAGCATATCTGCCCAAAAAGTGGTGTATCTTGAAACCCTCAGCAAACCTCAATGATGATCAAGTGGCACCAAGTGTGTCATATGCTTGTCAAAATGCAGATTGCACAAGTCTTGGATATCAAACTTCATGTGGTAGTTTAGATGCTCGTGGTAACATCTCGTATGCATTCAATAGCTATTACCAAGTGAATGACCAGATTGATAGTGCATGCAAATTCCCTGGCCTTTCTGTTGTCACTGACAAGGATCCTTCTGCTGGAGATTGCAGATTCATAATCATGATCCAGACAGATTCTACTGGTTTATATGGGAATGGGAGAATTGGATCTCTCAGAATAGTACTCttggtatttttgtttttcactcTTCTGTGA 1452 0.4249 MELMGGGKFRGCLVFVFFATLLVGLVNGIGVNWGTQLTHPLPPSTIVKMLKDNGFQKVKLFDADPDILNALKKSGIQVMVGIPNDMLYTMANNMQAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFEATTLPALQNIQSALVKAGLGNQVKVTVPLNADVYQSTQVPSDGDFRPDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYSDPNFPVDYAFFNGFQSPINDNGRIYDNVFDANHDTLVWALQKNGFGNMPIIVGEVGWPTDGDRNADLQYAQRFNQGFMSRYIAGKGTPMRPGPIDAYLFSLIDEDSKSIQPGNFERHWGLFYYDGQPKYQLNIGSRANGLVRATGVAYLPKKWCILKPSANLNDDQVAPSVSYACQNADCTSLGYQTSCGSLDARGNISYAFNSYYQVNDQIDSACKFPGLSVVTDKDPSAGDCRFIIMIQTDSTGLYGNGRIGSLRIVLLVFLFFTLL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0637 483 SMART X8_cls 366 450 IPR012946 -
Ssu5g0637 483 Gene3D Glycosidases 27 353 - -
Ssu5g0637 483 Gene3D - 363 460 - -
Ssu5g0637 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 460 IPR044965 GO:0004553|GO:0005975
Ssu5g0637 483 Pfam X8 domain 366 435 IPR012946 -
Ssu5g0637 483 Pfam Glycosyl hydrolases family 17 29 346 IPR000490 GO:0004553|GO:0005975
Ssu5g0637 483 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Ssu5g0637 483 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Ssu5g0637 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 18 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0637 Ssu-Chr5 14945213 14948170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0637 9 482 Glycoside Hydrolase AT4G31140 67.702 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0637 K19893 - gmx:100790297 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0637 5 14945213 14948170 Ssu1g2619 1 71501909 71503815 PCT
Ssu1g3381 1 87250766 87254751 Ssu5g0637 5 14945213 14948170 PCT