Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2619 ATGGCTGGAGCCGAATTCTCCATGTGGGAGCTTTGTTTGATATTGGTTTTAGCTCATTACCAACTACAAGGTGCCCAAGGGGCAGAGTCTATACCAGGTCTTGGTGTCAATTGGGGTGCATTAACGTCCCACCCTTTGAATCCTAACATTGTGGTGAATATGCTAAAGGACAATGGGATCAAGAAGGTGAAACTTTTCGATGCAGATTCTTGGACCGTGAGTGCTTTGTCTGGTACAGACATTGAAGTGATGGTCGGAATTCCTAATGATCAATTGAGTAAATTAGCTGGAAGTAGGGGAGACGCAGAAGATTGGGTGAAAAAAAATCTCACCAAACATCTTCATAGTCATAATGGGGGCGTGAACATCAGATACGTATCTGTAGGAAATGAGCCATTCTTGAAAGATTACAACGGTACCTATGTGAAGACCACATTCCCAGCAATGCAAAATATCCAAAAGGCTATCGATAAGGCTGGTCATGGAGACAGAGTGAAGGTGACTACGGCTTTGAATGCCGATATTTACCATTCTCCTTCAGACAAGCCATCAGACGGAGATTTTAGGAGTGACATTCGCGACGCAATAGAACAAATACTGAGTTTTCTTCATGAAAGGAACTCACCATTTCTTGTCAACATATACCCTTTCCTTAGTCTCTTCCAGAATGACAATTTTCCGGAAGAATTAGCATTCTTTGGTAGTCAGGGAAAAATAATTGATGACAAAAATGCACAATATACCAATGTGTTTGACGCAAATTTAGATACCCTTGTTTGGTCATTGAAAAAGGCTGGCTACCCTGACATGAGAATTATGGTTGGTGAAATTGGATGGCCAACTGACGGTAACAAAAATGCTAATAACCACAATGCAAAAAGGTTCTACCAAGGGCTCCTTAAGAGAATAGCAAGCAAGAAAGGAACTCCACTTCTTCCCGGCGCCATGGACATgtacctattttctctttttgatgAGAACTTGAAGAGTATTCAACCTGGCAACTTTGAGCGTCACTGGGGAATTTTTCGCTATGATGGAAAGCCTAAGTTTCCTATTGATTTTTCTGGTCAGGGTCAAGACAAATGGCCCGTGGCAGCCAAAGGTGTAGTTTACCAAGATCGTAAATGGTGCATCCTAAGCGGTGATGTTAAGAACTTGAGTCTCGTACCAAGCTCTTTAGACTATGCTTGCGCTGGTGCTGATTGTACAAGCTTAGGATTTGGTTGTTCTTGTGGAAATTTAGACCTGGCTGGCAATGCTTCATTTGCTTTCAACCAGTACTTTCAGACAAGGGACCAAAGCATTGAGGCATGTGATTTCAATGGATTGGGCACTATTGTAACACAGGATCCATCAAACGGAAGTTGCTTATTCTTTATAGAATTAGAGAGCAGTGGTGACATGCTCAGAGCAATGCGTACCCTGGGAAGCCTTTTAATTGGATTGTCATTGTTTTTCATAGCATTTACATAA 1476 0.414 MAGAEFSMWELCLILVLAHYQLQGAQGAESIPGLGVNWGALTSHPLNPNIVVNMLKDNGIKKVKLFDADSWTVSALSGTDIEVMVGIPNDQLSKLAGSRGDAEDWVKKNLTKHLHSHNGGVNIRYVSVGNEPFLKDYNGTYVKTTFPAMQNIQKAIDKAGHGDRVKVTTALNADIYHSPSDKPSDGDFRSDIRDAIEQILSFLHERNSPFLVNIYPFLSLFQNDNFPEELAFFGSQGKIIDDKNAQYTNVFDANLDTLVWSLKKAGYPDMRIMVGEIGWPTDGNKNANNHNAKRFYQGLLKRIASKKGTPLLPGAMDMYLFSLFDENLKSIQPGNFERHWGIFRYDGKPKFPIDFSGQGQDKWPVAAKGVVYQDRKWCILSGDVKNLSLVPSSLDYACAGADCTSLGFGCSCGNLDLAGNASFAFNQYFQTRDQSIEACDFNGLGTIVTQDPSNGSCLFFIELESSGDMLRAMRTLGSLLIGLSLFFIAFT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2619 491 Pfam Glycosyl hydrolases family 17 34 355 IPR000490 GO:0004553|GO:0005975
Ssu1g2619 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 4 473 - -
Ssu1g2619 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 4 473 IPR044965 GO:0004553|GO:0005975
Ssu1g2619 491 ProSitePatterns Glycosyl hydrolases family 17 signature. 270 283 IPR000490 GO:0004553|GO:0005975
Ssu1g2619 491 Gene3D - 371 466 - -
Ssu1g2619 491 SUPERFAMILY (Trans)glycosidases 34 355 IPR017853 -
Ssu1g2619 491 Pfam X8 domain 376 446 IPR012946 -
Ssu1g2619 491 Gene3D Glycosidases 33 362 - -
Ssu1g2619 491 SMART X8_cls 376 459 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2619 Ssu-Chr1 71501909 71503815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2619 28 471 Miscellaneous Gene Families AT5G64790 55.405 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2619 - - gmx:100794658 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2619 1 71501909 71503815 Ssu1g2619 1 71501909 71503815 ECH
Ssu5g0637 5 14945213 14948170 Ssu1g2619 1 71501909 71503815 PCT