Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3381 ATGGAGTTGATGGGGGGTGCAAAGTTTAGTAgctgtgttgttgttgttgttgtgttgtttagCGCGCTGTTAGTGGGGTCAGTGAGTGGGATTGGTGTGAATTGGGGGACACAGTCGACACACCCTTTGTCACCGTCCAAGGTGGTGAAAATGCTGAAGGACAATGGCATTCAGAAGGTTAAGCTTTTTGATGCTGATCCGGGTATCTTAGATGCTCTCAAGAAGTCTGGGATACAGGTCATGGTGGGTATTCCAAATGACATGCTTTATTCGCTGGCTAACAGTGTGGAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCCAAGCACGTCTCTTCTGGCGGAGTGGACATCAGGTACGTTGCAGTGGGGAATGAACCATTCTTGTCAACATACAATGGTACCTACGAAGCCACAACTCTTCCAGCTCTTCAAAACATCCAGGCAGCTCTCACAAAATCCGGTTTGAGCAACCGGGTTAAAGTCACTGTCCCCTTAAATGCCGACGTATACCAAAGCTCGTCCGAAAAGCCATCCGACGGCGGTTTCAGGCCAGACATCAACAATGTCATGCTGCAGATTGTCAAGTTCTTAAACGACAATAGAGCTCCCTTTACAGTGAACATCTACCCTTTTATCAGCCTCTACTCAGACCCCAATTTTCCCGTTGACTACGCCTTTTTCAACGGCTATCAGCCTGCCATAAACGACAATGGAAGGACCTATGACAACGTCTTTGATGCTAACCATGACACTCTAGTGTGGGCACTGCAGAAGAATGGGTTTGGAAACTTGCCTATAATTGTGGGGGAAATTGGGTGGCCCACAGATGGGGACCGAAATGCAAATCTTCAATATGCACAACGTTTTAACCAAGGTTTCATGTCACGTTATATGTCTGGCAAGGGTACCCCAATGAGGCCTGGTCCTATAGATGCTTATTTGTTTAGTCTCGTAGATGAAGATGGCAAAAGCATTCAGCCAGGGAACTTTGAGCGTCATTGGGGGTTGTTTTACTTTGATGGGCAACCCAAGTACCAACTCAACCTTGGGTCAACACGAGGTAATGGGTTAGTAGGGGCTAGTGGCGTTGATCACTTGGCTAAAAAGTGGTGTGTTTTGAAACCCTCAGCAAACCTTAATGATAACCAACTGGCACCAAGTGTGGCCTATGCTTGTCAAAATGCGGATTGCACTAGTCTTGGGTATGGGACATCGTGTGGCAATTTGGATGTTCATGGTAACATTTCTTTTGCGTTTAATAGCTACTACCAGATTAATGACCAGATGGACAGTGCATGCAAATTCCCGGGCCTCTCCATGATCACTGACAAGGATCCTTCCGTTGGAGATTGCAAGTTCAGAATCATGATCCAGACAGATTCTGCGGGGCTACATGGAAGAGTTGGATCTCTAACAATAGtgctttgtttttttgttttttggctaTCCTGTAATCTTTGGTTTTGA 1470 0.4456 MELMGGAKFSSCVVVVVVLFSALLVGSVSGIGVNWGTQSTHPLSPSKVVKMLKDNGIQKVKLFDADPGILDALKKSGIQVMVGIPNDMLYSLANSVEAAEKWVSKNVSKHVSSGGVDIRYVAVGNEPFLSTYNGTYEATTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSEKPSDGGFRPDINNVMLQIVKFLNDNRAPFTVNIYPFISLYSDPNFPVDYAFFNGYQPAINDNGRTYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQYAQRFNQGFMSRYMSGKGTPMRPGPIDAYLFSLVDEDGKSIQPGNFERHWGLFYFDGQPKYQLNLGSTRGNGLVGASGVDHLAKKWCVLKPSANLNDNQLAPSVAYACQNADCTSLGYGTSCGNLDVHGNISFAFNSYYQINDQMDSACKFPGLSMITDKDPSVGDCKFRIMIQTDSAGLHGRVGSLTIVLCFFVFWLSCNLWF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3381 489 Gene3D Glycosidases 30 356 - -
Ssu1g3381 489 SMART X8_cls 370 454 IPR012946 -
Ssu1g3381 489 SUPERFAMILY (Trans)glycosidases 31 349 IPR017853 -
Ssu1g3381 489 Pfam X8 domain 370 440 IPR012946 -
Ssu1g3381 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 17 463 - -
Ssu1g3381 489 Pfam Glycosyl hydrolases family 17 31 349 IPR000490 GO:0004553|GO:0005975
Ssu1g3381 489 Gene3D - 366 463 - -
Ssu1g3381 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 463 IPR044965 GO:0004553|GO:0005975
Ssu1g3381 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 265 278 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3381 Ssu-Chr1 87250766 87254751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3381 15 463 Glycoside Hydrolase AT4G31140 70.824 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3381 K19893 - gmx:100796552 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3381 1 87250766 87254751 Ssu5g0637 5 14945213 14948170 PCT