Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0563 ATGGCCAAGCACGACACCAACCTCAAGAGCCCTCGCCGATCCACTTCGCTGGCCATAGTGGACGGCATTTTCGCCAGGAAGAACTTCTTCTACGACAGGCTTCCCTCCCAACCCCTCAGACTCACCGTCCTCAAACTAGACGGTTCCTGCTTCAATATTCAAGTTTCGAAGACGGCGACCGTTGCGCAACTGAAGGACGCAGTGGAGGCCGTCTTCAGTCACGTGCCACGCCAGGGCCCAGCAAAAATTTCATGGGCACATGTTTGGGGGCAGTTTTGCTTATGCTATGATGGACAGAAGCTAGTTACGGAGAAGGATTATCTTCGAAATTATGGCATCAAGGATGGTGACCAGCTTCGTTTCATCCGCCATGTCTCAAACAATTGCTGTGTTCAAAGAAAGCGGTTGAAGAAAAGAGTAGTCTATTTGAAACAACACAGGAGGTCAACACAAGTGAATAGCGATCAACCCAAAGGAAATTGTGATGATGATGAGATTAGTTCTGATGATGAAGCCATAGAGAATGCAAAGATCAAGCATCATCATATTgaagcagcagcagcagcagcagaagaagaagaagaagaagaagagaagagcgTTGGAAAGAACAAATTAGTTGGCTTTGTGGGAGAGTTGTTCTCATACACTCCACTAGCAGTTGTGAGAAGAACTAGAACTAAAAGCAGGATTTGGCCATCAACGATTCCCAGATGTTTACTGGGTAGTTTTAGAAAGATTAGAAGCATTGTATGCTTTGGCGGGAAGAGGCACTATTCTCGGAGACTTCCATGGAGACAGTAG 804 0.4328 MAKHDTNLKSPRRSTSLAIVDGIFARKNFFYDRLPSQPLRLTVLKLDGSCFNIQVSKTATVAQLKDAVEAVFSHVPRQGPAKISWAHVWGQFCLCYDGQKLVTEKDYLRNYGIKDGDQLRFIRHVSNNCCVQRKRLKKRVVYLKQHRRSTQVNSDQPKGNCDDDEISSDDEAIENAKIKHHHIEAAAAAAEEEEEEEEKSVGKNKLVGFVGELFSYTPLAVVRRTRTKSRIWPSTIPRCLLGSFRKIRSIVCFGGKRHYSRRLPWRQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0563 267 Pfam Ubiquitin-like domain 39 125 IPR040610 -
Ssu5g0563 267 CDD Ubl_SNRNP25 39 124 IPR040610 -
Ssu5g0563 267 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 5 264 IPR039690 GO:0000398|GO:0005689
Ssu5g0563 267 Gene3D - 34 132 - -
Ssu5g0563 267 SUPERFAMILY Ubiquitin-like 34 130 IPR029071 -
Ssu5g0563 267 Coils Coil 173 193 - -
Ssu5g0563 267 PANTHER - 5 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0563 Ssu-Chr5 12443684 12446934 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0563 - - gmx:100820296 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0563 5 12443684 12446934 Ssu5g0563 5 12443684 12446934 ECH
Ssu1g3468 1 88923812 88925724 Ssu5g0563 5 12443684 12446934 ECH
Ssu5g0563 5 12443684 12446934 Ssu1g3469 1 88926547 88927194 PCT