Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3469 ATGGCGAACATGATTATGGCTTCCTACAAACCCCTGGTTCCAGTCTGCAACAATTCCCGTTCCCCCGCACCCAGAGTCCCCATTCTCCAAATTTCACTCCCCAAAGTCCCAACCCCGAAACTGAAACTCCCGATTTCAAAGCCCCAGGTGCTGTCCCTCGTGGGGATGGCAGCACCCCTGGTGTTAGCCGGGCCCTCCCTCGCAGAAGAAATGGAGAAAGCAGCTCTGTTCGACTTCAACCTGACCCTGCCTATAATAATGGTGGAGTTTCTGCTGCTGATGGTTGCGTTGGACAAGATTTGGTTCACCCCACTTGGGAAATTCATGGACGAGAGGGACGCGGCGATCAGGGAGAAGCTGAACAGCGTGAAGGACACGTCGGAGGAGGTGAAGCAGTTGGAGGAGAAGGCGAGTGCTGTGATGGCGGCTGCCCGGGCGGAGATAGCGGCGGCTCTGAacaagatgaagaaggagaCGCAGGCTGAGGTGGAGCAGAAGATTGCCGAGGGTAGGAAGAAAGTGGAGGCTGAGCTGCAGGAGGCTCTCGCCAGCTTGGAGTTGCAAAAGGAAGAAACCATCAAGTCCCTTGATTCCCAGATTGCCGCTCTTAGTCAGGAGATTGTTAAAAAGGTCCTTCCCACTgcttaa 648 0.534 MANMIMASYKPLVPVCNNSRSPAPRVPILQISLPKVPTPKLKLPISKPQVLSLVGMAAPLVLAGPSLAEEMEKAALFDFNLTLPIIMVEFLLLMVALDKIWFTPLGKFMDERDAAIREKLNSVKDTSEEVKQLEEKASAVMAAARAEIAAALNKMKKETQAEVEQKIAEGRKKVEAELQEALASLELQKEETIKSLDSQIAALSQEIVKKVLPTA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3469 215 Hamap ATP synthase subunit b [atpF]. 77 214 IPR002146 GO:0015078|GO:0015986|GO:0045263
Ssu1g3469 215 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 1 214 - -
Ssu1g3469 215 Coils Coil 116 169 - -
Ssu1g3469 215 Coils Coil 171 195 - -
Ssu1g3469 215 CDD ATP-synt_Fo_b 82 212 - -
Ssu1g3469 215 Pfam ATP synthase B/B' CF(0) 83 212 IPR002146 GO:0015078|GO:0015986|GO:0045263
Ssu1g3469 215 Hamap ATP synthase subunit b' [atpF2]. 76 213 IPR034679 GO:0015078|GO:0015986|GO:0045263
Ssu1g3469 215 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3469 Ssu-Chr1 88926547 88927194 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3469 K02109 - gmx:100527009 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3469 1 88926547 88927194 Ssu1g3469 1 88926547 88927194 ECH
Ssu5g0563 5 12443684 12446934 Ssu1g3469 1 88926547 88927194 PCT