Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3468 ATGGATGAGAGAAGGTTGATGATTGTTTCTCACGAAATCCCTCGACGATCTCGGAGCATGCAATTTTCTTCGCCGGTGAACGTTGATGGCAGTTTTTCATACGACAGGATTCCTTCCGAAACGCTCAACCTCTCCATCCTCAAATTGAATGCCTCTTCCTTCCGTGTTGAAGTCGCAAATGCAGCAACAGTTGCAGATCTCAAGCAGGCAGTGGAAGCGGTTTTCTGTCACATGCCTCAGAAGGGGCCGGGGAAAATATTATGGCCACTTGTTTGGCGGCAATTTTGCTTATGCTATCAAGGACACAAATTAGTTACAGAAACGGATTATATTAGAGATTATGGCATCAAGGATGGTGACCAGCTTCATTTCGTTCACCATTTATCTGACACTTGCAGTTTCCAGAGAAAGCAGTCGAAGAAACAAGTTGTCAATTTGAAACAACACAGGAGGAGGTGCAGGTCATCGTCACAAGTGAATAGATATCAACAGAAAGAACATAACGATGATGACGACATTGGTTTGGATGATATAGTCATAGAGAATGGGAAGATCCAGCATTGCAATGCAGAAGAAAATCGAGGAGGAAAGAGCAGGTTAGGTGGCTTTTTGGGAGGGTTTTTCTCGCCCACCTGGCTGGCAGTTGTGAGAAGAGCTAGAATTGAGGGCAGGATTTGCTGCTCAATGGTTGCTAGAAGTATAGTGAgcagttttagaaaaattagaagaattttAAGCTATTGCAGGAGGCAGCATTACTCTCGGAGACCCACATGGAGAGAATATTGA 789 0.4322 MDERRLMIVSHEIPRRSRSMQFSSPVNVDGSFSYDRIPSETLNLSILKLNASSFRVEVANAATVADLKQAVEAVFCHMPQKGPGKILWPLVWRQFCLCYQGHKLVTETDYIRDYGIKDGDQLHFVHHLSDTCSFQRKQSKKQVVNLKQHRRRCRSSSQVNRYQQKEHNDDDDIGLDDIVIENGKIQHCNAEENRGGKSRLGGFLGGFFSPTWLAVVRRARIEGRICCSMVARSIVSSFRKIRRILSYCRRQHYSRRPTWREY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3468 262 CDD Ubl_SNRNP25 44 127 IPR040610 -
Ssu1g3468 262 Pfam Ubiquitin-like domain 43 128 IPR040610 -
Ssu1g3468 262 SUPERFAMILY Ubiquitin-like 38 131 IPR029071 -
Ssu1g3468 262 Gene3D - 37 136 - -
Ssu1g3468 262 PANTHER - 13 259 - -
Ssu1g3468 262 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 13 259 IPR039690 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3468 Ssu-Chr1 88923812 88925724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3468 - - gmx:100790105 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3468 1 88923812 88925724 Ssu1g3468 1 88923812 88925724 ECH
Ssu1g3468 1 88923812 88925724 Ssu5g0563 5 12443684 12446934 ECH