Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3407 ATGCCATTTGCAGGAAGTAGAACTGCCCGGAGAAGTTTGGAGTTTGGGAAGACCCATGTGGTGAGGCCAAAAGGAAAACACCAAGCCACTATGGTTTGGCTGCATGGTCTTGGTGACAATGGTTTGAGCTCTTATCAGCTGCTGGAATCTCTTCCACTTCCAAATATAAAGTGGATTTGCCCAACTGCTCCTACCCGGCCTGTAGCCATACTTGGTGGTTTTTCTTGCACtgcatGGTTTGATATGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATGCCTCAGCAGCACATATAGCCAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTTGGAATTGGAGGCTTCAGTATGGGTGCTGCAGTAGCTCTGTACTCCGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATCCCGTACCCTGTCAACTTACGAGCAGTTCTTGGACTAAGTGGCTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAGATTGAAGTGTCACATGAAGCAAGAAGGCGAGCTGCCTCCTTACCTGTTTTGCTGAGCCATGGAATCAGTGATGATGTGGTCCTCTACAAATACGGAGAGAAATCAGCCCAGTCCTTAAGCTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGGGCTTGGTCATTATACTGTTCCTAGGGAGATGGATGAGGTCTCCAATTGGCTTAGCTCAAGGCTGGGGCTTGGGGGATCCACATGA 753 0.4768 MPFAGSRTARRSLEFGKTHVVRPKGKHQATMVWLHGLGDNGLSSYQLLESLPLPNIKWICPTAPTRPVAILGGFSCTAWFDMGELSEDGPDDWEGLDASAAHIANLLSTEPADVKVGIGGFSMGAAVALYSATCFAMGRYGNGIPYPVNLRAVLGLSGWLPGSRSLRNKIEVSHEARRRAASLPVLLSHGISDDVVLYKYGEKSAQSLSSAGFRYITFKSYDGLGHYTVPREMDEVSNWLSSRLGLGGST 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3407 250 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 4 249 - -
Ssu4g3407 250 Pfam Phospholipase/Carboxylesterase 18 241 IPR003140 GO:0016787
Ssu4g3407 250 Gene3D alpha/beta hydrolase 9 245 IPR029058 -
Ssu4g3407 250 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 4 249 - -
Ssu4g3407 250 SUPERFAMILY alpha/beta-Hydrolases 19 244 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3407 Ssu-Chr4 84699683 84702401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3407 3 249 Acyl Lipid Metabolism Gene Families AT3G15650 74.899 9.78e-129 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3407 K06130 - gmx:100782153 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3407 4 84699683 84702401 Ssu8g0147 8 2139912 2142354 ECH
Ssu1g1936 1 53989220 53996187 Ssu4g3407 4 84699683 84702401 ECH
Ssu4g3407 4 84699683 84702401 Ssu4g3407 4 84699683 84702401 ECH
Ssu8g0147 8 2139912 2142354 Ssu4g3407 4 84699683 84702401 PCT