Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1936 ATGAGCTTTGCTGCACCATCACTTGGTTCTGCTGGTGGTAGATCTGCTAGAAGAGCATTTGAGTTTGGAAGAACCTATGTTGTCAGGCCTAAAGGTAAACACCAAGCAACAATAGTCTGGTTGCATGGACTCGGGGATAATGGCTCCAGTTGGTCCCAGCTCTTAGAGACCCTTCCTCTTCCAAATATTAAATGGATATGTCCAACTGCTCCTACTCAGCCAATATCTATATTTGGTGGCTTTCCGTCTACTGCTTGGTTTGATGTTGGAGACATTTCAGACGAAGCTCCTGATGATCTAGAAGGTTTGGATGCTTCAGCTGCGCATGTTGCAAATTTGTTGTCTACAGAACCTGCAGACATTAAGCTTGGTGTTGGAGGGTTCAGCATGGGAGCAGCTACTGCCCTGTACTCTGTGTCCTGCTTTACTGCCGGAAGATATGGGAACGGCAATCCTTATCCAGCCAACCTAAGTGCAGCTGTTGGTTTAAGTGGCTGGCTTCCATGCTCAAAGACCTTGAGTAACAAGTTACAAGGGGTAGATGAAGCTACAAGGCGTTCTCAATCCTTTCCCGTTTTGCTGTGTCATGGAAAAGGTGACGATGTTGTTCCCTATAAGTTTGGTGAGAAATCATCTAAGTGCTTAAGTTCAACTGGATTTCAGGATGTAACTTTTAAATCTTACAATGGGCTTGGACACTACACAATTCCAGAAGAGATGGATGAGGTTTGTGCTTGGCTAACATCAAAATTGGGCCTCGAGGGGAATTCTGCTTAG 777 0.4517 MSFAAPSLGSAGGRSARRAFEFGRTYVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTQPISIFGGFPSTAWFDVGDISDEAPDDLEGLDASAAHVANLLSTEPADIKLGVGGFSMGAATALYSVSCFTAGRYGNGNPYPANLSAAVGLSGWLPCSKTLSNKLQGVDEATRRSQSFPVLLCHGKGDDVVPYKFGEKSSKCLSSTGFQDVTFKSYNGLGHYTIPEEMDEVCAWLTSKLGLEGNSA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1936 258 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 257 - -
Ssu1g1936 258 Pfam Phospholipase/Carboxylesterase 26 247 IPR003140 GO:0016787
Ssu1g1936 258 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 257 - -
Ssu1g1936 258 Gene3D alpha/beta hydrolase 17 252 IPR029058 -
Ssu1g1936 258 SUPERFAMILY alpha/beta-Hydrolases 26 251 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1936 Ssu-Chr1 53989220 53996187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1936 1 255 Acyl Lipid Metabolism Gene Families AT5G20060 73.725 9.26e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1936 K06130 - gmx:100791683 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1936 1 53989220 53996187 Ssu4g3407 4 84699683 84702401 ECH
Ssu1g1936 1 53989220 53996187 Ssu8g0147 8 2139912 2142354 ECH
Ssu1g1936 1 53989220 53996187 Ssu1g1936 1 53989220 53996187 ECH