Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2868 ATGGCGGAGGAATCGGAGCACACGGTGCCGCCGGCGAGCGGCGAATCGTTGCTCGACAAGATCGCCGAGAAGCTTCACGGCCACGATTCTTCCTCCGATTCCGATTCCGAGAAGAAGGACACTTCGTCGATTAAGGAGAAGGTTTTCCGGCTCTTCGGCAGGGAGAAGCCCGTTCACTCCGTCCTCGGCGGCGGAAAGCCTGCTGATGTGCTTTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGGTGGAGCTACGGCTGTTTGGATCTTTTTTGAGTTGCTGGAATATCACCTGCTTACTCTAGTCTGTCACATTTTGATTCTATTGCTTGcagttttgtttttgtggtCCAATGCCCATACCTTTATTCACAAGGCACCACCTCGCATCCCAGTTGTTCATCTTCCTGAAGAACCATTTGTCCAAGTTGCATCTGCTTTGACAATTGAAATTAACCGCGGATTTGCTGCCTTGCATGCTATTGCTTCTGGAAGAGATTTGAAGACATTTCTCATTGTTATTGTTGGCACGTGGATTCTATCAATTTTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGtttttgttttgttgcatACGGTTCCTGTCTTTTATGATAAGTATGAGAACAAGATAGACCCTCTGGCAGAGAAGGCAGTCATTGAATTCAAAAAGCAGTATGCTGTGTTTGATGCAAAGGTCTTGAGTAAGATTCCGAAAGGCCCGTTGAAAGGCAAGAAGTTAGCTTAG 762 0.4514 MAEESEHTVPPASGESLLDKIAEKLHGHDSSSDSDSEKKDTSSIKEKVFRLFGREKPVHSVLGGGKPADVLLWRNKKISAGVLGGATAVWIFFELLEYHLLTLVCHILILLLAVLFLWSNAHTFIHKAPPRIPVVHLPEEPFVQVASALTIEINRGFAALHAIASGRDLKTFLIVIVGTWILSILGSWCNFLTLFYIVFVLLHTVPVFYDKYENKIDPLAEKAVIEFKKQYAVFDAKVLSKIPKGPLKGKKLA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2868 253 ProSiteProfiles Reticulon domain profile. 67 253 IPR003388 -
Ssu4g2868 253 PANTHER RETICULON 1 251 IPR045064 GO:0009617
Ssu4g2868 253 PANTHER RETICULON-LIKE PROTEIN 1 251 - -
Ssu4g2868 253 Pfam Reticulon 68 223 IPR003388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2868 Ssu-Chr4 73417845 73419780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2868 - - gmx:100779788 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2868 4 73417845 73419780 Ssu7g0843 7 16962881 16965279 ECH
Ssu4g2868 4 73417845 73419780 Ssu4g2868 4 73417845 73419780 ECH
Ssu3g0625 3 15274724 15281168 Ssu4g2868 4 73417845 73419780 PCT