Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0625 ATGATTCtagatcttttcttttcttttctagtaTCATTCACACACACGcctcatatttatatacatagtCATGAGTTGCTCCTTGCTTCATGTCATCAGTTTTCTTCCCAACACGGTCTTGGAGAGATCATTGGGCGAGGAATTAGTTCAGCAGTGGACGCACCCGGAAAAGGAGTGGTTATGGAAAATCACAATTTACCAAAGTATTGGGCTGTGCCACTCTGCATGCTTTTGTTGGGTCAATGGATCTCTGTTGAAGCTGCCCCTCCACGCTCTCTTATCATACAACTCCCTGGCTTTCACGGCAGTTTTCCATCCAAGCACTATTCCGGATATATAAGTATTGATGGAAATGCCGAGAGTGGGAAGAACCTGTTCTACTACTTCGTTAGTTCAGAAAGAAGTCCAGGGAAGGACCCAGTTGTTCTATGGCTGAATGGTGGACCTGGGTGCTCCAGCTTCGATGGCTTCGTTTATGAGCATGGACCATTCAATTTTGAGGCTGCAAAATCTAAAGGGAATCTACCCACTTTGCATATCAATCCTTACAGCTGGTCGAAGGTTTCCAACATTATATATTTGGATTCTCCGGCGGGTGTTGGACTCTCTTACTCCAAGAACACAAGCAAATATGCTACTGGGGACCTACAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGTGGTTTCAGCAATTCCCGGAATTCCTTACTAATCCATTTTATATTGCTGGGGAGTCTTATGCCGGAGTTTATGTGCCTACTCTATCTTTTGAAGTCGTTAAAGGAATCAGGAGTGGTACAAAGCCCGTGATCAATTTtaagGGTTACATGGTTGGCAATGGTGTCACGGACGAAATAATTGACGGCAATGCTCTTTTCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGagGATTTACAAGCTTCTTGCAAAGGAAACTACTACGATGCGTACTCTTTGGACGAAAATGATGTGTGTTATAAGAACATTCAAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCCCTGATGCTGCCACAGCCACAGGAAATGGAAGCTTACCACTGAGTTTCCACCAATTAGGGGTTACTGAGAGGCCCCTCCCAGTGAGGAAGAGAATGTTTGGTAGAGCTTGGCCTTTTCGAGCACCAGTCAAAGCTGGCCTTGTTACATTATGGCCCCAATTGGCTGAAACGAGACATGTCGCCTGTGTTAGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGTAGTCAGGAAAGCCATTCATGCTGAGTCGGAAAGTTTGGCGGGTCCGTGGGAATTATGTACCAATAGGATAGAGTACCGTCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCACGATGGGCTATAAGGCACTTATTTTCAGTGGCGACCATGATATGTGCGTGCCATTTACCGGAAGTGAGGCTTGGACCCGATCTCTGGGATATAAGATTGTGGATGAATGGAGACCATGGAGCTCTAATAACCAAGTTGCTGGGTACTTGCAAGCGTACGAGAACAACCTAACCTTCCTCACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCGCTGGAAGCGTTGGATTTTTACAGCCGTTGGTTGGAAGGAAAGCCAATATAA 1692 0.4444 MILDLFFSFLVSFTHTPHIYIHSHELLLASCHQFSSQHGLGEIIGRGISSAVDAPGKGVVMENHNLPKYWAVPLCMLLLGQWISVEAAPPRSLIIQLPGFHGSFPSKHYSGYISIDGNAESGKNLFYYFVSSERSPGKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKSKGNLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYATGDLQTASDTHVFLLKWFQQFPEFLTNPFYIAGESYAGVYVPTLSFEVVKGIRSGTKPVINFKGYMVGNGVTDEIIDGNALFPFVHGMGLISDSIYEDLQASCKGNYYDAYSLDENDVCYKNIQKVDRAIDGLNVYNILEPCYHFPDAATATGNGSLPLSFHQLGVTERPLPVRKRMFGRAWPFRAPVKAGLVTLWPQLAETRHVACVSDEVASSWLNNVVVRKAIHAESESLAGPWELCTNRIEYRHNAGSMIPYHKNLTTMGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWSSNNQVAGYLQAYENNLTFLTIKGAGHTVPEYKPLEALDFYSRWLEGKPI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0625 563 SUPERFAMILY alpha/beta-Hydrolases 94 562 IPR029058 -
Ssu3g0625 563 ProSitePatterns Serine carboxypeptidases, serine active site. 243 250 IPR018202 GO:0004185
Ssu3g0625 563 PANTHER CARBOXYPEPTIDASE 77 562 - -
Ssu3g0625 563 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 562 IPR001563 GO:0004185|GO:0006508
Ssu3g0625 563 Gene3D alpha/beta hydrolase 87 372 IPR029058 -
Ssu3g0625 563 Pfam Serine carboxypeptidase 98 560 IPR001563 GO:0004185|GO:0006508
Ssu3g0625 563 ProSitePatterns Serine carboxypeptidases, histidine active site. 530 547 IPR033124 GO:0004185
Ssu3g0625 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 229 254 IPR001563 GO:0004185|GO:0006508
Ssu3g0625 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 530 543 IPR001563 GO:0004185|GO:0006508
Ssu3g0625 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 181 193 IPR001563 GO:0004185|GO:0006508
Ssu3g0625 563 PRINTS Carboxypeptidase C serine protease (S10) family signature 194 204 IPR001563 GO:0004185|GO:0006508
Ssu3g0625 563 Gene3D - 419 457 - -
Ssu3g0625 563 Gene3D - 465 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0625 Ssu-Chr3 15274724 15281168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0625 424 563 Calmodulin-binding Proteins AT2G22960 49.286 1.81e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0625 K16296 - gmx:100790895 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0625 3 15274724 15281168 Ssu4g2868 4 73417845 73419780 PCT