Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0992 ATGGAAATGGAAGCCGCTGCCGTGGTCGAAACGACGACGAATCAAGCGGAGCGGGGTTCGGAGAAGATGAGTTTGAGAACGGAGATTGATACTTCAGCGCCCTTTGAATCGGTGAAGGAAGCCGTCACCAAGTTCGGGGGGGTTGGTTACTGGAAACCCCTTCACAGTAAGATTGCGTGTGTGGCTTATGATTCTGagCACTACGCAGAAGAACTTGGTGCTGAAAAACTGGAGGAGCAGGCTGCGGTATTGGAGAAGGAACTAGTCCTGAAAGAAAGGGAAACTCTTGATGTGTTGAAAGAATTGGAAAGTACCAAAAGGCTTGTTGAAGATTTGAAATCAAAGCTGCAGAAGGAAGAGTCTGAGGCAAATTTGAATCTTCAGATGAGTGTGTGTGATCAAAAATCAGTTGTtgaggagaaagaagaaaaggaaaaccaaGTGAGTCAGTTGAATGTTCTTCAGTCTTCCAGGGAAGGTTTTATACTGTACCCTTCATCTGCTCCAGGCTTAATACTAATGGAATTGAAGCAGGCCAAAGTGAATTTAACCAGAACTACTAATGACCTTGCTGACATCCGAGCTTCTGTTGAATCGCTTAATAAGAAGTTAGAGAAGGAAAGAATCTCACTTGAGAAAACTCGTGAGAGGTTAGctcaaaattcttcaaaaatatcTTCTCTTGAGGAAGAGCTAAGCCAGACCAGACTAAGACTGCAAATAACAAAAGATGCTGAAATTAAAGGTGCTCAGATGATCCTTCAGATATTACCAGAGAGCTCCAGCGATTGA 792 0.4129 MEMEAAAVVETTTNQAERGSEKMSLRTEIDTSAPFESVKEAVTKFGGVGYWKPLHSKIACVAYDSEHYAEELGAEKLEEQAAVLEKELVLKERETLDVLKELESTKRLVEDLKSKLQKEESEANLNLQMSVCDQKSVVEEKEEKENQVSQLNVLQSSREGFILYPSSAPGLILMELKQAKVNLTRTTNDLADIRASVESLNKKLEKERISLEKTRERLAQNSSKISSLEEELSQTRLRLQITKDAEIKGAQMILQILPESSSD 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0992 263 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 11 244 - -
Ssu3g0992 263 Pfam Weak chloroplast movement under blue light 27 125 IPR008545 -
Ssu3g0992 263 MobiDBLite consensus disorder prediction 1 26 - -
Ssu3g0992 263 Coils Coil 99 122 - -
Ssu3g0992 263 Coils Coil 74 94 - -
Ssu3g0992 263 MobiDBLite consensus disorder prediction 8 26 - -
Ssu3g0992 263 PANTHER MYOSIN HEAVY CHAIN-LIKE 11 244 - -
Ssu3g0992 263 Coils Coil 183 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0992 Ssu-Chr3 23248821 23251156 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0992 - - gmx:100785049 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0992 3 23248821 23251156 Ssu3g0992 3 23248821 23251156 ECH
Ssu3g0992 3 23248821 23251156 Ssu4g2486 4 62557106 62559687 PCT