Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2462 ATGAAGCACATATCCAGCTCCATTGAAATTTCAGAAATGGAAGCAGGTGTGCCAGAGAGGCACGAGAAGGAGGAAATGCAGAACAAGGCAACGGTGGAGGCACTCTACCGGGCGCTGTTTGGCCAGGGCCAAACGGACACGGTGGCAAACATGCTTGCGGGCGACCTTGAGTGGTGGTTCCACGGACCCCCGCAGTGCCAGCACATGATGAGGGTGCTCACGGGGGAGACTGCCCACAACAACGGGTTCCGGTTCGAGCCGAGGAGCGTCACCGCCATCGGCGAGTGTGTCATCGCCGAGGGGTGGGAAGGTAAGGCCTACTGGGTGCACGTTTGGACCGTGAAGAATGGTCACATCACGCAGTTCagagagtacttcaacacatgGCTTGTGGTCCGGGACTTGAGATCACAGAGGTGGGAGAACAGGCTTGACAACATGACATTGTGGCAGAGCCAGCCGCGGGATCTCTACCGCCGCTCCCTGCCGGGACTCGTGTTAGCCATTTAG 510 0.5667 MKHISSSIEISEMEAGVPERHEKEEMQNKATVEALYRALFGQGQTDTVANMLAGDLEWWFHGPPQCQHMMRVLTGETAHNNGFRFEPRSVTAIGECVIAEGWEGKAYWVHVWTVKNGHITQFREYFNTWLVVRDLRSQRWENRLDNMTLWQSQPRDLYRRSLPGLVLAI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2462 169 PANTHER OS07G0691300 PROTEIN 21 169 IPR009798 -
Ssu4g2462 169 SUPERFAMILY NTF2-like 25 135 IPR032710 -
Ssu4g2462 169 PANTHER OS05G0342100 PROTEIN 21 169 - -
Ssu4g2462 169 Gene3D - 17 134 - -
Ssu4g2462 169 Pfam Wound-induced protein WI12 70 169 IPR009798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2462 Ssu-Chr4 61783853 61784362 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2462 - - gmx:100800423 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1018 3 23995150 23995623 Ssu4g2462 4 61783853 61784362 ECH
Ssu4g2462 4 61783853 61784362 Ssu4g2462 4 61783853 61784362 ECH
Ssu9g1269 9 46349534 46349884 Ssu4g2462 4 61783853 61784362 ECH
Ssu4g2462 4 61783853 61784362 Ssu9g1269 9 46349534 46349884 ECH