Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1018 atggCAGAAGATAACATGGAGAGTCATCAAAAGGTGGAAATGCAAAACAAGGCAACAGTTGAAATGCTGTACAAGGCACTACTGGGGCAAGGAACAATGGACAAAGTGGCCAAATTGCTAGCAAGTGACCTTGAGTGGTGGTTCCATGGCCCCCCTCAGTGCCACCACATGATGAGGGTGCTCACAGGGGAAACAGATCACAACAAAGGCTTCCGGTTCGAGCCGAGGCGGGCCGCCGCCATCGGAGACTGCGTGATCGCCGAGGGGTGGGAGGGGCAGGCCTATTGGGTGCACGTTTGGACCCTCAAAAATGGCCTCATAACTCAGTTTagagagtacttcaacacatgGCTTGTGGTGAGGGATTTGAGGTCACCAGGGTGGGGAGATAGCAAAGAAAACATGACATTGTGGCAGAGCCAGCCTCGTGATCTACATCACCGGTCACTGCCAGGACTTGTGCTAGCCATTTAG 474 0.5084 MAEDNMESHQKVEMQNKATVEMLYKALLGQGTMDKVAKLLASDLEWWFHGPPQCHHMMRVLTGETDHNKGFRFEPRRAAAIGDCVIAEGWEGQAYWVHVWTLKNGLITQFREYFNTWLVVRDLRSPGWGDSKENMTLWQSQPRDLHHRSLPGLVLAI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1018 157 Pfam Wound-induced protein WI12 58 157 IPR009798 -
Ssu3g1018 157 Gene3D - 3 126 - -
Ssu3g1018 157 SUPERFAMILY NTF2-like 13 123 IPR032710 -
Ssu3g1018 157 PANTHER OS05G0342100 PROTEIN 10 157 - -
Ssu3g1018 157 PANTHER OS07G0691300 PROTEIN 10 157 IPR009798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1018 Ssu-Chr3 23995150 23995623 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1018 - - ccaj:109798074 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1018 3 23995150 23995623 Ssu4g2462 4 61783853 61784362 ECH
Ssu3g1018 3 23995150 23995623 Ssu3g1018 3 23995150 23995623 ECH
Ssu3g1018 3 23995150 23995623 Ssu9g1269 9 46349534 46349884 ECH