Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1216 ATGGCAAGCATGACAAGAGAAAGGACAGATGTGAACTCAAGAAAAAGATTGGTCACAGCTGTGTTGGTTTTGGTGATTGTTGGTGCTTTCTTCTACTTTTATTCTCAGAGTAGTGACTCATCTCCTGTTGAGTATGGTGATAAATCTGTAAGACACTTTGGTTTGGGAGGGGACAAAGATGATGATGAATCTTCCTCCATACTTATTGGAGGAGAGGACAGTGCTATACAAAAGAGCATTCCGGTCTGTGATGATCGTCTATCAGAGCTGATTCCTTGTCTAGACAGAAACCTCATATACCAATCAAGATTGAAGCTTGATTTATCTTTGATGGAGCACTATGAGAGACACTGTCCAATGCCTGAGAGGCGTTATAATTGTTTAATTCCTCCTCCTCCAGGGTACAAGATTCCAATCAAGTGGCCCAAAAGCAGAGACCAGGTATGGAAGGCAAATATACCTCATACCCATCTTGCAACTGAAAAATCTGACCAGAATTGGATGGTTGTGAAAggtgaaaaaatagtttttcccGGTGGAGGAACCCACTTCCATTATGGTGCTGATAAATACATTGCTTCAATTGCTAACATGCTTAATTTtccaaacaataatataaacaatgGAGGAAGGGTCCGGTCTGTTCTTGATGTTGGCTGTGGGGTTGCTAGCTTTGGAGGATATCTTCTTTCTTCCAATGTGATGGCAATGTCATTGGCACCGAATGATGTTCATGAAAATCAAATCCAGTTTGCCTTAGAGAGGGGAATTCCAGCATATCTTGGAGTCTTAGGGACCCTAAGACTCCCTTACCCGAGTAGATCTTTTGAATTTGCTCATTGTTCTCGCTGTAGAATTGATTGGCTTCAGAGAGATGGTATACTACTCCTTGAGCTGGATCGGTTACTCAGGCCAGGAGGTTATTTCGCATACTCATCTCCTGAAGCCTATGCACAGGATGAAGAGGATAGGAGAATATGGAGAGAAATGAGTGCTCTTGTGGAGAGGATGTGCTGGAAAATAGCTGCTAAGAGGAATCAGACTGTTATTTGGGTCAAGCCTCTGACAAATAGCTGCTACTCAAAGAGATTGCCTGGTACTCAGCCTCCACTCTGCAAATCTGATGATGATCCTGATGCTGTTTGGGGAGTTAAAATGAAAGCTTGCATTTCGCGTTATTCTGATCAAATGCACAAAGCAAAAGGAAGTGGTTTGGCTCCTTGGCCTGCTCGATTGACTACTCCACCTCCTCGTCTAGCAGAAATTCGTTACTCTACTGAAATGTTTGAGAAGGACAtgGAAGTCTGGCAACAACGAGTTCATAATTACTGGAGCAAGCTAGGCAGTAAGATTAAGCCAGACTCAATTCGGAATGTGATGGATATGAAGGCAAATTTGGGTTCATTTGCAGCAACTTTGAAGGACAAAGATGTTTGGGTTATGAATGTGGTGCCAGAAAATGGGCCAAACACTCTTAAGATAATATATGACAGAGGACTGATAGGAACAGTTCACAACTGGTGTGAAGCTTTTTCAACCTACCCTCGAACTTATGATTCACTCCATGCATGGACTGTATTTTCTGATATTATTAAGAAAGAATGCAGTCCAGAGGATTTATTAATTGAGATGGATAGAATCCTGAGGCCGAAAGGTTTCATCATTGTCCATGATAAGCGGTCAGTGGTGGAGTATGTAAAGAAATATTTGCCAGCATTACACTGGGAGGCTGTGACCATATATGACGTAGATCAAGGTCAGGATGATGCAGTGTTTATAATTCAAAAGAAGATGTGGCTCACTAGTGATAGCATCCGGGATTCAGAATAG 1830 0.4126 MASMTRERTDVNSRKRLVTAVLVLVIVGAFFYFYSQSSDSSPVEYGDKSVRHFGLGGDKDDDESSSILIGGEDSAIQKSIPVCDDRLSELIPCLDRNLIYQSRLKLDLSLMEHYERHCPMPERRYNCLIPPPPGYKIPIKWPKSRDQVWKANIPHTHLATEKSDQNWMVVKGEKIVFPGGGTHFHYGADKYIASIANMLNFPNNNINNGGRVRSVLDVGCGVASFGGYLLSSNVMAMSLAPNDVHENQIQFALERGIPAYLGVLGTLRLPYPSRSFEFAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDRRIWREMSALVERMCWKIAAKRNQTVIWVKPLTNSCYSKRLPGTQPPLCKSDDDPDAVWGVKMKACISRYSDQMHKAKGSGLAPWPARLTTPPPRLAEIRYSTEMFEKDMEVWQQRVHNYWSKLGSKIKPDSIRNVMDMKANLGSFAATLKDKDVWVMNVVPENGPNTLKIIYDRGLIGTVHNWCEAFSTYPRTYDSLHAWTVFSDIIKKECSPEDLLIEMDRILRPKGFIIVHDKRSVVEYVKKYLPALHWEAVTIYDVDQGQDDAVFIIQKKMWLTSDSIRDSE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1216 609 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 343 IPR029063 -
Ssu4g1216 609 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 89 596 IPR004159 GO:0008168
Ssu4g1216 609 PANTHER METHYLTRANSFERASE PMT3-RELATED 4 606 - -
Ssu4g1216 609 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 421 580 IPR029063 -
Ssu4g1216 609 Gene3D Vaccinia Virus protein VP39 186 358 IPR029063 -
Ssu4g1216 609 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 4 606 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1216 Ssu-Chr4 19305229 19311532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1216 - - gmx:100805403 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1216 4 19305229 19311532 Ssu4g1216 4 19305229 19311532 ECH
Ssu4g1216 4 19305229 19311532 Ssu7g3217 7 76566728 76570873 PCT
Ssu7g2233 7 44078828 44082438 Ssu4g1216 4 19305229 19311532 PCT