Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0974 ATGCAATCTCCTGTTGATTTGTCCACTAACAGAGTGGAAATGATCCTCCTCAATTTAGGGGGGCTAAAGTACTGGACCTATAAGCCTCAACATGCAATTGTCTTGAACAGGGGTCATGATGTTGCGGTCAATTGGGAAGGAGATGCTGGCTCAATAGACATAAGTGGAACACCTTTCTTTCTCCAACAAGCCCATTGGCACTGGCCTTCCGAACATACCATCAACGGCCGGAGGTATGACTTGGAGTTGCACTTGGTTCATGTTAGCCCACAGCCTGATGGAACAAACAAGACCGCTGTTGTTGGTATTTTGTACAAGTACGGTTCGCCCGATCCATTCCTCTCTAAGGATGAAGAGAAAAGCGTAGGGGTGATTGATCCCTCAGAAATCATGATGGGCAGCAAGATGTACTACAGGTACATGGGATCACTCACTGCACCTCCTTGCACTGAAGGCATCATTTGGACCGTTGATGAGAAGTATGCCAAAAGGAATGCAAGGCCGCTGCAGCCCCTAAATCAGCGAGAGATACAACTCTATGTCCCAAAGCCAAAGAAACCTCTGCATTAA 570 0.4719 MQSPVDLSTNRVEMILLNLGGLKYWTYKPQHAIVLNRGHDVAVNWEGDAGSIDISGTPFFLQQAHWHWPSEHTINGRRYDLELHLVHVSPQPDGTNKTAVVGILYKYGSPDPFLSKDEEKSVGVIDPSEIMMGSKMYYRYMGSLTAPPCTEGIIWTVDEKYAKRNARPLQPLNQREIQLYVPKPKKPLH 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0974 189 ProSitePatterns Alpha-carbonic anhydrases signature. 70 86 IPR018338 GO:0004089|GO:0008270
Ssu4g0974 189 PANTHER CARBONIC ANHYDRASE 1 185 IPR023561 GO:0004089|GO:0008270
Ssu4g0974 189 SUPERFAMILY Carbonic anhydrase 1 177 IPR036398 -
Ssu4g0974 189 Gene3D Alpha carbonic anhydrase 1 185 IPR036398 -
Ssu4g0974 189 Pfam Eukaryotic-type carbonic anhydrase 2 160 IPR001148 -
Ssu4g0974 189 PANTHER EUKARYOTIC-TYPE CARBONIC ANHYDRASE 1 185 - -
Ssu4g0974 189 ProSiteProfiles Alpha-carbonic anhydrases profile. 1 189 IPR001148 -
Ssu4g0974 189 CDD alpha_CA_prokaryotic_like 1 179 IPR041891 -
Ssu4g0974 189 SMART Carb_anhydrase_2a 1 181 IPR001148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0974 Ssu-Chr4 15582114 15583591 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0974 K01674 - gmx:100799362 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0974 4 15582114 15583591 Ssu7g2469 7 48156798 48159948 PCT
Ssu7g2470 7 48182017 48183944 Ssu4g0974 4 15582114 15583591 PCT