Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0893 ATGCAGGGTGAGCAACAGAACAACCAGTTGGTAGTGCAGAATTCGGGGAGCCTCAGCTTCAGCAGCCATTTGTCGAAGGAAGATGAAGAGATGTCGAGGTCTGCTCTCTCCACCTTCAGGGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAAGTGAGAGAGAAGGTTCAGCTTCAGTTGGGTCGAGTCgaggaagaaacaaagcgtCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGGATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATGCCTGCCAGAAGAAGGAGAAAGAGTACAAAGAAGCCCTTGAAGCTTTTAATGACAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGAGCGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCCATGCAATGA 495 0.4444 MQGEQQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHACQKKEKEYKEALEAFNDKNREKVQLITKLMELVSESERLRMKKLEELSKNIDSMQ 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0893 164 MobiDBLite consensus disorder prediction 23 41 - -
Ssu4g0893 164 PANTHER RAB6-INTERACTING PROTEIN GORAB 6 162 IPR007033 -
Ssu4g0893 164 MobiDBLite consensus disorder prediction 1 41 - -
Ssu4g0893 164 PANTHER EXPRESSED PROTEIN 6 162 - -
Ssu4g0893 164 Pfam Transcriptional activator 13 162 IPR007033 -
Ssu4g0893 164 Coils Coil 110 130 - -
Ssu4g0893 164 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g0893 164 Coils Coil 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0893 Ssu-Chr4 14082271 14083941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0893 - - gmx:100499923 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0893 4 14082271 14083941 Ssu7g1171 7 25903107 25904796 ECH
Ssu4g0893 4 14082271 14083941 Ssu4g0893 4 14082271 14083941 ECH
Ssu4g0893 4 14082271 14083941 Ssu3g2379 3 74956379 74958145 ECH