Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1171 ATGGGCCTAGTTTGCAGCAACAGAAAGGAAATGCAGAAAATGAAGAACCTTGGTAGTATTGGAAGCAGTGGGAGGCTATCGGCAGAGGAGTGTGAGGATGAGGAGATTTCAAAACTGGCCATCTCCACATTTCAATCTAAGGAAGAAGAGATTGAGAGGAAAAAGATGGAGGTGAGAGAgaaagttgaacttcaacttgGTCGTGCTGAAGAAGAGACCAGGCGCTTGGCACACATTTGGGAAGAGCTTGAAGTGCTGGACGATCCCATGAGGAAGGAAGTTGCAATGGTACGCAAGAAGATTGACTTGGCTAACAGAGATTTAAAGCCACTGGGACTTAACTACCAGAAAAAGGAGAAAGAGTATAAAGAAGCCTTGGAAGCTTTCAACGAAAAGAACAAAGAGAAGGCTCATCTAGTAGCCACACTAGTTGAGatgcTGACTGAGAGTGAAAGACTGAGGATGAAAAAACTGGAAGAGCTATGCAAGACCATAGAGTCTATGTCACTGAAACCATAA 519 0.422 MGLVCSNRKEMQKMKNLGSIGSSGRLSAEECEDEEISKLAISTFQSKEEEIERKKMEVREKVELQLGRAEEETRRLAHIWEELEVLDDPMRKEVAMVRKKIDLANRDLKPLGLNYQKKEKEYKEALEAFNEKNKEKAHLVATLVEMLTESERLRMKKLEELCKTIESMSLKP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1171 172 Coils Coil 41 61 - -
Ssu7g1171 172 Pfam Transcriptional activator 15 167 IPR007033 -
Ssu7g1171 172 Coils Coil 115 135 - -
Ssu7g1171 172 PANTHER RAB6-INTERACTING GOLGIN (DUF662) 11 168 - -
Ssu7g1171 172 PANTHER RAB6-INTERACTING PROTEIN GORAB 11 168 IPR007033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1171 Ssu-Chr7 25903107 25904796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1171 - - gmx:100794044 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0893 4 14082271 14083941 Ssu7g1171 7 25903107 25904796 ECH
Ssu7g1171 7 25903107 25904796 Ssu7g1171 7 25903107 25904796 ECH