Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2379 ATGGCAACACCAAAACAGTCATATGAGCAGCAACAACAACCAAATGCACAGCGAGTGAGGAGCTCAGGGATGATTAACTGCAACCAGAGCCCAATGAGGGATGATAAGGAGGAGGAGATGTCAAGATCAGCTTTGGCAATGTTCCGAgcaaaggaagaagaaattgagagaaaaaaaatggaggtgAGGGATAAGGTCCATGCTTATCTGGGTCGAGTAGAGGAGGAAACAAAGCGCTTGGCTGAGATTAGAGAAGAGCTTGAGGGTCTCACAGATCCGTCGAGGAAGGAAGTTGCAATAGTTCGAAAGAAGATAGACAGTGTTAACAAAGAGTTAAAGCCACTGGGCCAAACCTGCCAGAGAAAGGAGAGAGAATACAAGGAAGCCCTTGACGCTTTCAATGagaaaaacaaggaaaaagcTCAACTTGTTACTAAACTGATGGAGTTGGTGACTGAAAGTGAAAAGTTGAGGATGAAGAAGCTGGAGGAGTTAAGCAAAAACGTAGATACCCTGTACTGA 522 0.4061 MATPKQSYEQQQQPNAQRVRSSGMINCNQSPMRDDKEEEMSRSALAMFRAKEEEIERKKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPSRKEVAIVRKKIDSVNKELKPLGQTCQRKEREYKEALDAFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNVDTLY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2379 173 Gene3D Nucleotidyltransferases domain 2 62 152 - -
Ssu3g2379 173 MobiDBLite consensus disorder prediction 1 41 - -
Ssu3g2379 173 PANTHER RAB6-INTERACTING PROTEIN GORAB 9 172 IPR007033 -
Ssu3g2379 173 PANTHER - 9 172 - -
Ssu3g2379 173 Coils Coil 66 86 - -
Ssu3g2379 173 Coils Coil 119 139 - -
Ssu3g2379 173 MobiDBLite consensus disorder prediction 1 29 - -
Ssu3g2379 173 Pfam Transcriptional activator 20 171 IPR007033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2379 Ssu-Chr3 74956379 74958145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2379 - - ccaj:109798987 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2379 3 74956379 74958145 Ssu3g2379 3 74956379 74958145 ECH
Ssu4g0893 4 14082271 14083941 Ssu3g2379 3 74956379 74958145 ECH