Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0641 ATGcatcaaagaaaaatgaagttgAGGTCCTCAATCATATTTATTTGCATTCTGGCGTATGTGAACGTGACAGCATTTTCAGAGGAATTGTCAGCGTACGACGTTCTTGAGAAATATGACCTGCCAGTGGGTCTTCTTCCGCAAGGTGCGACAGGGTATGAACTAAACGAGAAGAACGGGCAATTCACGGCGTATTTGAATGGAACATGCTACTTCAGCGTACAGTCGTATGAGCTCAAGTACAAGTCCACCATCAAGGGAGTGATCTCGAAGGGCAAGTTGGCCAAGCTGAAGGGTGTTCGTGTGAAGGTCGAACTGTTGTGGCTCAAAATCGTGGAGGTCACTCGCGAGGGCGATGACCTTCAATTCTCTCTGGGTGTCGCTTCTGCTGTCTTTAGCGTGGACAGCTTTTCGGAGAGCCCTCAGTGTGGATGTGGATTCGATTGCAACAATTTAAGTCAAAACGGTCATGTTTCTTCTCTTTAG 486 0.4568 MHQRKMKLRSSIIFICILAYVNVTAFSEELSAYDVLEKYDLPVGLLPQGATGYELNEKNGQFTAYLNGTCYFSVQSYELKYKSTIKGVISKGKLAKLKGVRVKVELLWLKIVEVTREGDDLQFSLGVASAVFSVDSFSESPQCGCGFDCNNLSQNGHVSSL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0641 161 PANTHER T31J12.3 PROTEIN-RELATED 11 156 IPR007493 -
Ssu4g0641 161 SUPERFAMILY At5g01610-like 7 149 IPR036758 -
Ssu4g0641 161 Pfam Protein of unknown function, DUF538 32 137 IPR007493 -
Ssu4g0641 161 PANTHER DUF538 FAMILY PROTEIN 11 156 - -
Ssu4g0641 161 Gene3D - 18 143 IPR036758 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0641 Ssu-Chr4 10136484 10136969 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0641 - - gmx:100527514 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0641 4 10136484 10136969 Ssu4g0641 4 10136484 10136969 ECH
Ssu7g1993 7 39603127 39603779 Ssu4g0641 4 10136484 10136969 ECH
Ssu4g0641 4 10136484 10136969 Ssu7g1992 7 39589285 39589836 PCT