Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0431 ATGTTTTTGGTGGATTGGTTTTATGGGATTCTAGCGTCGCTTGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGCCTCGATAACGCTGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGAGACTAGTCCAGCACCAGCCTACACAGTATCCTACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATCTAGGGGGTCATCAGATTGCTCGAAGAGTTTGGAAAGATTACTATGCCCAgGTAGATGCAGTGGTCTACTTAGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAAGAGCTGGATGCTCTGCTCTCTGATGAGTCTTTAGCCAATGTCCCTTTCCTTATCCTTGGGAACAAGATAGATATTCCATATGCTGCCTCAGAAGAAGAGTTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAGGGTAAGGTAAATTTGTCCGACTCAAATGTCCGTCCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGGGATGGTTTCAAATGGctttcccagtacatcaaataG 582 0.4278 MFLVDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLILGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0431 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Ssu4g0431 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Ssu4g0431 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 138 IPR005225 GO:0005525
Ssu4g0431 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Ssu4g0431 193 CDD Sar1 2 192 - -
Ssu4g0431 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Ssu4g0431 193 SMART arf_sub_2 4 193 - -
Ssu4g0431 193 PANTHER PROTEIN SAR1A, PUTATIVE, EXPRESSED-RELATED 1 193 - -
Ssu4g0431 193 Gene3D - 1 193 IPR027417 -
Ssu4g0431 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Ssu4g0431 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Ssu4g0431 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Ssu4g0431 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Ssu4g0431 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Ssu4g0431 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Ssu4g0431 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0431 Ssu-Chr4 7032354 7035556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0431 K07953 - gmx:100305650 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0431 4 7032354 7035556 Ssu7g1781 7 36292574 36294957 ECH
Ssu4g0431 4 7032354 7035556 Ssu4g0431 4 7032354 7035556 ECH
Ssu6g0386 6 6172014 6174017 Ssu4g0431 4 7032354 7035556 ECH
Ssu1g1255 1 27762786 27764954 Ssu4g0431 4 7032354 7035556 ECH